Comprehensive analysis of Long non-coding RNA expression in dorsal root ganglion reveals cell type specificity and dysregulation following nerve injury - Supplemetary Data

<div><p><b>Comprehensive analysis of Long non-coding RNA expression in dorsal root ganglion reveals cell type specificity and dysregulation following nerve injury - Supplemetary Data</b></p> <p><br></p><p>S. Data 1: Novel LncRNAs in mouse and rat, in syntenically conserved regions between human, mouse and rat.<br></p><p> </p><p><br></p><p>S. Data 2: Novel LncRNAs in mouse DRG antisense of orthologous genes in mouse and rat.</p> <p><br></p><p>S. Data 3: Novel LncRNAs in rat DRG antisense of orthologous genes in mouse and rat.</p> <p><br></p><p>S. Data 4: Neuron sub-type specificity of ENSEMBL genes and novel LncRNAs. Neuron sub-type index is 1. MHN, 2. MHN (MI, IS), 3. C-LTMR, 4. MHN (IS), 5. MHN (IS), 6. MHN, 7. MHN (NS), 8. MR, 9. MHN, 10. MR. Average log2 expression holds the average expression in the neuron sub-type where the gene or LncRNAs was higher expressed. Expression SEM hold the standard error of the mean for the average expression estimator.</p> <p><br></p><p>S. Data 5: DE analysis results and fpkm values of novel LncRNAs for IPSC-derived sensory neurons vs IPSC. Results are DESeq2 determined for the whole gene set of ENSEMBL genes and novel LncRNAs. Experimental design is ~ cell_line*condition.</p> <p><br></p><p>S. Data 6: Expression data for all antisense LncRNAs in IPSC-derived sensory neurons vs IPSC.</p> <p><br></p><p>S. Data 7: Expression data for all intergenic LncRNAs in IPSC-derived sensory neurons vs IPSC.</p> <p><br></p><p>S. Data 8: Expression data for all LncRNAs antisense of pain genes in IPSC-derived sensory neurons vs IPSC.</p> <p><br></p><p>S. Data 9: Expression data for all intergenic LncRNAs adjacent to pain genes in IPSC-derived sensory neurons vs IPSC.</p> <p><br></p><p>S. Data 10: Novel LncRNAs in human IPSC and mouse, in syntenically conserved regions between human, mouse and rat.</p> <p><br></p><p>S. Data 11: Novel LncRNAs in human IPSC antisense of orthologous genes in human and mouse.</p> <p><br></p><p>S. Data 12: DE analysis results and fpkm values of novel LncRNAs for rat DRG SNT vs Sham. Results are DESeq2 determined for the whole gene set of ENSEMBL genes and novel LncRNAs. Experimental design is ~ condition.</p> <p><br></p><p>S. Data 13: Expression data for all antisense LncRNAs in rat DRG SNT vs Sham.</p> <p><br></p><p>S. Data 14: Expression data for all intergenic LncRNAs rat DRG SNT vs Sham.</p> <p><br></p><p>S. Data 15: DE analysis results and fpkm values of novel LncRNAs for BALB/c and B10.D2 mouse DRG SNI vs Sham. Results are DESeq2 determined for the whole gene set of ENSEMBL genes and novel LncRNAs. Experimental design is ~ sex + strain*condition.</p> <p><br></p><p>S. Data 16: Expression data for all antisense LncRNAs in mouse DRG SNI vs Sham.<br></p> <p><br></p><p>S. Data 17: Expression data for all intergenic LncRNAs mouse DRG SNI vs Sham.</p>