Additional file 9: of Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons
- Marcel Smid (54590)
- Robert Coebergh van den Braak (5437478)
- Harmen van de Werken (5437481)
- Job van Riet (5437487)
- Anne van Galen (3525365)
- Vanja de Weerd (1354092)
- Michelle van der Vlugt-Daane (3072198)
- Sandra Bril (5437472)
- Zarina Lalmahomed (5437475)
- Wigard Kloosterman (3698350)
- Saskia Wilting (5351063)
- John Foekens (3521840)
- Jan IJzermans (5437484)
- John Martens (3502718)
- Anieta Sieuwerts (3525362)
Publication date
June 2018
DOIAbstract
Library size and PCA plots by RIN. A shows the library size (log10) in samples with low RIN values (RINâ<â7) or high RIN (>â=â9). B-E show PCA plots, colored by samples with low RIN (red) or high RIN (blue), by normalization method. (PDF 2842 kb
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