Table S2. Detailed analysis of WT and hoxb1b mutant RNA-seq data. 866 differentially expressed genes identified from the RNA-Seq experiment are listed in sheet 2. All GO terms associated with Biological Processes for both up-regulated and down-regulated genes are shown in sheets 3 and 4. Sheet 5 shows the subset of differentially expressed genes that is expressed in the hindbrain. In sheet 5, the genes in column A were derived from the ZFIN database (refer to sheet 3 in Additional file 2: Table S1). (XLSX 215 kb
List of differentially expressed genes encoding growth factors/ligands and factors associated with a...
Up-regulated genes in RPL5 MO (fold-change > 2 and p-value < 0.05) showed coordinated regulatory tre...
Duct-specific genes listed by decreased expression level. We found 293 genes corresponding to the fo...
Table S3. Detailed analysis of WT and gas6 mutants RNA-seq data. 1590 differentially expressed gene...
Table S1. Identification of additional r4, r5 and r6 genes. This file represents the data downloaded...
Figure S4. Comparison between RNA-seq analyses of Hoxa1 mutant mouse embryos and hoxb1b mutant zebra...
Figure S2. Expression of the r4 gene set is unaffected in hoxb1a mutants at least until 24hpf. Expre...
Data S2. Amino acid sequences of wildtype and mutant gbx1 alleles. Amino acid sequences of two mutan...
Data S1. Amino acid sequences of wildtype and mutant gas6 alleles. Amino acid sequences of four muta...
Figure S1. Genotyping of embryos collected from cross of hoxb1a heterozygous parents. Several mutant...
Figure S6. Genotyping data for sall4, egfl6, celf2 and greb1l mutants. sall4, egfl6, celf2 and greb1...
Figure S7. Scheme for generating gbx1 mutant line. (A) Schematic showing the 20 nucleotide (orange t...
Abstract Background Previous work aimed at understanding the gene regulatory networks (GRNs) governi...
Genes differentially expressed between heterozygous mutant and wild type brains at 6 months. Lists t...
Differentially expressed genes in BBS model. All genes exhibiting significant changes in bbs1-deplet...
List of differentially expressed genes encoding growth factors/ligands and factors associated with a...
Up-regulated genes in RPL5 MO (fold-change > 2 and p-value < 0.05) showed coordinated regulatory tre...
Duct-specific genes listed by decreased expression level. We found 293 genes corresponding to the fo...
Table S3. Detailed analysis of WT and gas6 mutants RNA-seq data. 1590 differentially expressed gene...
Table S1. Identification of additional r4, r5 and r6 genes. This file represents the data downloaded...
Figure S4. Comparison between RNA-seq analyses of Hoxa1 mutant mouse embryos and hoxb1b mutant zebra...
Figure S2. Expression of the r4 gene set is unaffected in hoxb1a mutants at least until 24hpf. Expre...
Data S2. Amino acid sequences of wildtype and mutant gbx1 alleles. Amino acid sequences of two mutan...
Data S1. Amino acid sequences of wildtype and mutant gas6 alleles. Amino acid sequences of four muta...
Figure S1. Genotyping of embryos collected from cross of hoxb1a heterozygous parents. Several mutant...
Figure S6. Genotyping data for sall4, egfl6, celf2 and greb1l mutants. sall4, egfl6, celf2 and greb1...
Figure S7. Scheme for generating gbx1 mutant line. (A) Schematic showing the 20 nucleotide (orange t...
Abstract Background Previous work aimed at understanding the gene regulatory networks (GRNs) governi...
Genes differentially expressed between heterozygous mutant and wild type brains at 6 months. Lists t...
Differentially expressed genes in BBS model. All genes exhibiting significant changes in bbs1-deplet...
List of differentially expressed genes encoding growth factors/ligands and factors associated with a...
Up-regulated genes in RPL5 MO (fold-change > 2 and p-value < 0.05) showed coordinated regulatory tre...
Duct-specific genes listed by decreased expression level. We found 293 genes corresponding to the fo...