Additional file 4: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Additional file 1: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S1. Number of genes expressed and novel transcripts. L and F represent the lean and fat chick...

Additional file 1: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Sequences of Chicken LncRNAs. A fasta file containing all the lncRNA sequences from chickens. (FA 34...

Supplementary Material for: Transcriptome Profile Analysis Reveals an Estrogen Induced LncRNA Associated with Lipid Metabolism and Carcass Traits in Chickens (Gallus Gallus)

Li H. (2886434)
Gu Z. (4273519)
Yang L. (3635365)
Tian Y. (4154389)
Kang X. (5919407)
Liu X. (3033234)

November 2018

Background/Aims: Accumulating evidences have demonstrated that long noncoding RNAs (lncRNA) play imp...

Additional file 1: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S1. Summary of protein-coding genes identified in the chicken liver libraries. (XLSX 4278Â kb

Additional file 5: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S5. Summary of differentially expressed lncRNAs between mature livers and immature livers in c...

Additional file 3: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S3. Sequence information of all expressed lncRNAs found in the present study. (FA 69436Â kb

Additional file 7: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S7. The differentially expressed target protein-coding genes of the differentially expressed l...

Additional file 9: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S9. LncRNAs and its potential target genes that are involved in some key pathways related to t...

Additional file 6: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S6. GO enrichment analysis (Pâ<â0.05) of the differentially expressed mRNAs. S gene number...

Additional file 8: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S8. GO enrichment analysis (Pâ<â0.05) of differentially expressed protein-coding genes tar...

Additional file 2: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S2. Summary of lncRNAs identified in the chicken liver libraries. 1. Class code: “x” represent...

Additional file 4: Table S3. of Combination analysis of genome-wide association and transcriptome sequencing of residual feed intake in quality chickens

Zhenqiang Xu (148195)
Congliang Ji (3554774)
Yan Zhang (8098)
Zhe Zhang (81603)
Qinghua Nie (147057)
Jiguo Xu (795332)
Dexiang Zhang (3554777)
Xiquan Zhang (147066)

August 2016

Differentially expressed genes identified in RNA sequencing in divergent RFI individuals. (XLS 37Â k...

Additional file 11: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Expression of Chicken LncRNAs. FPKM values for all lncRNAs from each RNA-seq library (2 libraries pe...

Additional file 4: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Exon Locations of Chicken LncRNAs. The genomic locations of the exons of all chicken lncRNAs. (GTF 7...

Additional file 1: of Identification of microRNAs controlling hepatic mRNA levels for metabolic genes during the metabolic transition from embryonic to posthatch development in the chicken

Julie Hicks (4411786)
Tom Porter (4411789)
Hsiao-Ching Liu (493573)

September 2017

All identified miRNAs expressed in the liver of E18, E20, D0, D1, and D3 chicks. Values are given as...

Additional file 1: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S1. Number of genes expressed and novel transcripts. L and F represent the lean and fat chick...

Additional file 1: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Sequences of Chicken LncRNAs. A fasta file containing all the lncRNA sequences from chickens. (FA 34...

Supplementary Material for: Transcriptome Profile Analysis Reveals an Estrogen Induced LncRNA Associated with Lipid Metabolism and Carcass Traits in Chickens (Gallus Gallus)

Li H. (2886434)
Gu Z. (4273519)
Yang L. (3635365)
Tian Y. (4154389)
Kang X. (5919407)
Liu X. (3033234)

November 2018

Background/Aims: Accumulating evidences have demonstrated that long noncoding RNAs (lncRNA) play imp...

Additional file 1: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S1. Summary of protein-coding genes identified in the chicken liver libraries. (XLSX 4278Â kb

Additional file 5: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S5. Summary of differentially expressed lncRNAs between mature livers and immature livers in c...

Additional file 3: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S3. Sequence information of all expressed lncRNAs found in the present study. (FA 69436Â kb

Additional file 7: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S7. The differentially expressed target protein-coding genes of the differentially expressed l...

Additional file 9: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S9. LncRNAs and its potential target genes that are involved in some key pathways related to t...

Additional file 6: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S6. GO enrichment analysis (Pâ<â0.05) of the differentially expressed mRNAs. S gene number...

Additional file 8: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S8. GO enrichment analysis (Pâ<â0.05) of differentially expressed protein-coding genes tar...

Additional file 2: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S2. Summary of lncRNAs identified in the chicken liver libraries. 1. Class code: “x” represent...

Additional file 4: Table S3. of Combination analysis of genome-wide association and transcriptome sequencing of residual feed intake in quality chickens

Zhenqiang Xu (148195)
Congliang Ji (3554774)
Yan Zhang (8098)
Zhe Zhang (81603)
Qinghua Nie (147057)
Jiguo Xu (795332)
Dexiang Zhang (3554777)
Xiquan Zhang (147066)

August 2016

Differentially expressed genes identified in RNA sequencing in divergent RFI individuals. (XLS 37Â k...

Additional file 11: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Expression of Chicken LncRNAs. FPKM values for all lncRNAs from each RNA-seq library (2 libraries pe...

Additional file 4: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Exon Locations of Chicken LncRNAs. The genomic locations of the exons of all chicken lncRNAs. (GTF 7...

Additional file 1: of Identification of microRNAs controlling hepatic mRNA levels for metabolic genes during the metabolic transition from embryonic to posthatch development in the chicken

Julie Hicks (4411786)
Tom Porter (4411789)
Hsiao-Ching Liu (493573)

September 2017

All identified miRNAs expressed in the liver of E18, E20, D0, D1, and D3 chicks. Values are given as...

Additional file 1: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S1. Number of genes expressed and novel transcripts. L and F represent the lean and fat chick...

Additional file 1: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Sequences of Chicken LncRNAs. A fasta file containing all the lncRNA sequences from chickens. (FA 34...

Supplementary Material for: Transcriptome Profile Analysis Reveals an Estrogen Induced LncRNA Associated with Lipid Metabolism and Carcass Traits in Chickens (Gallus Gallus)

Li H. (2886434)
Gu Z. (4273519)
Yang L. (3635365)
Tian Y. (4154389)
Kang X. (5919407)
Liu X. (3033234)

November 2018

Background/Aims: Accumulating evidences have demonstrated that long noncoding RNAs (lncRNA) play imp...

Additional file 4: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Abstract

Extracted data

Additional file 4: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Abstract

Extracted data

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