Additional file 1: of Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells

Additional file 9: Figure S8. of A gene expression signature identifying transient DNMT1 depletion as a causal factor of cancer-germline gene activation in melanoma

Julie Cannuyer (587767)
AurĂŠlie Van Tongelen (3585698)
Axelle Loriot (587768)
Charles De Smet (459307)

October 2015

shRNA-dependent inhibition of RB1, but not of p107 and p130, induces up-regulation of ICCG genes in ...

Additional file 2: of Imprinted and ancient gene: a potential mediator of cancer cell survival during tryptophan deprivation

Petr Tomek (1655677)
Shanti Gore (6004430)
Chloe Potts (6004433)
Cristin Print (6004436)
Michael Black (246211)
Ariane Hallermayr (6004439)
Michael Kilian (6004442)
Evelyn Sattlegger (59585)
Lai-Ming Ching (2481022)

November 2018

Association of IMPACT copy number (x-axis) and a mean IMPACT promoter methylation (y-axis; Î˛-value)...

Additional file 1: Table S1. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Alexandra Kalmár (123738)
Bálint Péterfia (130981)
Péter Hollósi (155769)
Orsolya Galamb (123720)
Sándor Spisák (123726)
Barnabás Wichmann (123721)
András Bodor (439486)
Kinga Tóth (123732)
Árpád Patai (785267)
Gábor Valcz (466332)
Zsófia Nagy (3515417)
Vivien Kubák (3515414)
Zsolt Tulassay (123741)
Ilona Kovalszky (130989)
Béla Molnár (123745)

October 2015

Clinical data of the analysed gene expression datasets (GSE4183, GSE37364, GSE10714 and GSE15960). (...

Additional file 6: of Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells

Ksenia Anufrieva (5461703)
Victoria Shender (5461709)
Georgij Arapidi (3606356)
Marat Pavlyukov (5461700)
Michail Shakhparonov (5461706)
Polina Shnaider (5461697)
Ivan Butenko (3455030)
Maria Lagarkova (3547298)
Vadim Govorun (2131033)

June 2018

Description of gene clusters identified by the time clusterization analysis. (XLSX 415 kb

Additional file 3: of Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells

Ksenia Anufrieva (5461703)
Victoria Shender (5461709)
Georgij Arapidi (3606356)
Marat Pavlyukov (5461700)
Michail Shakhparonov (5461706)
Polina Shnaider (5461697)
Ivan Butenko (3455030)
Maria Lagarkova (3547298)
Vadim Govorun (2131033)

June 2018

(A) Description of all alternative splicing events in cancer cell lines after therapy. (B) Identific...

Additional file 4: of Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells

Ksenia Anufrieva (5461703)
Victoria Shender (5461709)
Georgij Arapidi (3606356)
Marat Pavlyukov (5461700)
Michail Shakhparonov (5461706)
Polina Shnaider (5461697)
Ivan Butenko (3455030)
Maria Lagarkova (3547298)
Vadim Govorun (2131033)

June 2018

Figure S1. PCA clustering of splicing inclusion level differences between treated and untreated PDX ...

Additional file 8: of Conserved regulation of RNA processing in somatic cell reprogramming

Alexander Kanitz (121360)
Afzal Syed (6286067)
Keisuke Kaji (403022)
Mihaela Zavolan (16626)

February 2019

Figure S5. Changes in splicing factor expression in cancers. Fold changes in expression of individua...

Additional file 7: of Separation of breast cancer and organ microenvironment transcriptomes in metastases

Mohammad Alzubi (6431630)
Tia Turner (6431633)
Amy Olex (6431636)
Sahib Sohal (6431639)
Nicholas Tobin (4848271)
Susana Recio (6431642)
Jonas Bergh (23551)
Thomas Hatschek (22685)
Joel Parker (17174)
Carol Sartorius (6431645)
Charles Perou (3530138)
Mikhail Dozmorov (4630)
J. Harrell (6413768)

March 2019

Genes upregulated during liver metastasis; cancer and organ-specific changes. DESeq2 was used to ide...

Additional file 5: of Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line

Naresh Jayavelu (3473552)
Nadav Bar (248166)

December 2015

Statistically significant biological pathways affected by differentially expressed TGs in breast can...

Additional file 9: of Separation of breast cancer and organ microenvironment transcriptomes in metastases

Mohammad Alzubi (6431630)
Tia Turner (6431633)
Amy Olex (6431636)
Sahib Sohal (6431639)
Nicholas Tobin (4848271)
Susana Recio (6431642)
Jonas Bergh (23551)
Thomas Hatschek (22685)
Joel Parker (17174)
Carol Sartorius (6431645)
Charles Perou (3530138)
Mikhail Dozmorov (4630)
J. Harrell (6413768)

March 2019

Genes upregulated during lung metastasis; cancer and organ-specific changes. DESeq2 was used to iden...

Additional file 2: Dataset S1. of Integrated transcriptomics and metabolomics analysis to characterize cold stress responses in Nicotiana tabacum

Jingjing Jin (1277538)
Hui Zhang (7197)
Jianfeng Zhang (219107)
Pingping Liu (313822)
Xia Chen (299366)
Zefeng Li (636009)
Yalong Xu (4216729)
Peng Lu (158125)
Peijian Cao (83497)

June 2017

RNA-seq assembly results and expression analysis from various tissues. (XLSX 38411Â kb

Additional file 2: of Downregulation of histone H2A and H2B pathways is associated with anthracycline sensitivity in breast cancer

Marsela Braunstein (3440615)
Linda Liao (3440618)
Nicola Lyttle (3440624)
Nazleen Lobo (623561)
Karen Taylor (2317915)
Paul Krzyzanowski (3440609)
Irina Kalatskaya (3440600)
Cindy Yao (3440612)
Lincoln Stein (14330)
Paul Boutros (196570)
Christopher Twelves (3440627)
Richard Marcellus (2554267)
John Bartlett (602286)
Melanie Spears (3440621)

February 2016

Description of mRNA abundance data processing, module dysregulation score (MDS) and survival modelli...

Additional file 1: of A mathematical model as a tool to identify microRNAs with highest impact on transcriptome changes

Marzena Mura (6309653)
Roman Jaksik (6309656)
Anna Lalik (6309659)
Krzysztof Biernacki (1695766)
Marek Kimmel (39636)
Joanna Rzeszowska-Wolny (286036)
Krzysztof Fujarewicz (286030)

February 2019

Table S1. Summary of datasetÂ at our disposal downloaded from ArrayExpress database. Table includes ...

Additional file 1: of The transcriptome landscape of the carcinogenic treatment response in the blind mole rat: insights into cancer resistance mechanisms

Robert Altwasser (793861)
Arnon Paz (209967)
Abraham Korol (209962)
Irena Manov (3442250)
Aaron Avivi (209968)
Imad Shams (3442244)

January 2019

Table S1. RNA-Expression of Spalax. RNA expression divided between the different samples. Table S2. ...

Additional file 6: of Integrative analysis of the microRNA-mRNA response to radiochemotherapy in primary head and neck squamous cell carcinoma cells

Isolde Summerer (3509534)
Julia Hess (3140769)
Adriana Pitea (3509537)
Kristian Unger (2814205)
Ludwig Hieber (3509531)
Martin Selmansberger (3140772)
Kirsten Lauber (2734903)
Horst Zitzelsberger (626351)

September 2015

Significantly deregulated mRNAs in primary HN1957 after in vitro radiochemotherapy treatment. (PDF 1...

Additional file 9: Figure S8. of A gene expression signature identifying transient DNMT1 depletion as a causal factor of cancer-germline gene activation in melanoma

Julie Cannuyer (587767)
AurĂŠlie Van Tongelen (3585698)
Axelle Loriot (587768)
Charles De Smet (459307)

October 2015

shRNA-dependent inhibition of RB1, but not of p107 and p130, induces up-regulation of ICCG genes in ...

Additional file 2: of Imprinted and ancient gene: a potential mediator of cancer cell survival during tryptophan deprivation

Petr Tomek (1655677)
Shanti Gore (6004430)
Chloe Potts (6004433)
Cristin Print (6004436)
Michael Black (246211)
Ariane Hallermayr (6004439)
Michael Kilian (6004442)
Evelyn Sattlegger (59585)
Lai-Ming Ching (2481022)

November 2018

Association of IMPACT copy number (x-axis) and a mean IMPACT promoter methylation (y-axis; Î˛-value)...

Additional file 1: Table S1. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Alexandra Kalmár (123738)
Bálint Péterfia (130981)
Péter Hollósi (155769)
Orsolya Galamb (123720)
Sándor Spisák (123726)
Barnabás Wichmann (123721)
András Bodor (439486)
Kinga Tóth (123732)
Árpád Patai (785267)
Gábor Valcz (466332)
Zsófia Nagy (3515417)
Vivien Kubák (3515414)
Zsolt Tulassay (123741)
Ilona Kovalszky (130989)
Béla Molnár (123745)

October 2015

Clinical data of the analysed gene expression datasets (GSE4183, GSE37364, GSE10714 and GSE15960). (...

Additional file 6: of Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells

Ksenia Anufrieva (5461703)
Victoria Shender (5461709)
Georgij Arapidi (3606356)
Marat Pavlyukov (5461700)
Michail Shakhparonov (5461706)
Polina Shnaider (5461697)
Ivan Butenko (3455030)
Maria Lagarkova (3547298)
Vadim Govorun (2131033)

June 2018

Description of gene clusters identified by the time clusterization analysis. (XLSX 415 kb

Additional file 3: of Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells

Ksenia Anufrieva (5461703)
Victoria Shender (5461709)
Georgij Arapidi (3606356)
Marat Pavlyukov (5461700)
Michail Shakhparonov (5461706)
Polina Shnaider (5461697)
Ivan Butenko (3455030)
Maria Lagarkova (3547298)
Vadim Govorun (2131033)

June 2018

(A) Description of all alternative splicing events in cancer cell lines after therapy. (B) Identific...

Additional file 4: of Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells

Ksenia Anufrieva (5461703)
Victoria Shender (5461709)
Georgij Arapidi (3606356)
Marat Pavlyukov (5461700)
Michail Shakhparonov (5461706)
Polina Shnaider (5461697)
Ivan Butenko (3455030)
Maria Lagarkova (3547298)
Vadim Govorun (2131033)

June 2018

Figure S1. PCA clustering of splicing inclusion level differences between treated and untreated PDX ...

Additional file 8: of Conserved regulation of RNA processing in somatic cell reprogramming

Alexander Kanitz (121360)
Afzal Syed (6286067)
Keisuke Kaji (403022)
Mihaela Zavolan (16626)

February 2019

Figure S5. Changes in splicing factor expression in cancers. Fold changes in expression of individua...

Additional file 7: of Separation of breast cancer and organ microenvironment transcriptomes in metastases

Mohammad Alzubi (6431630)
Tia Turner (6431633)
Amy Olex (6431636)
Sahib Sohal (6431639)
Nicholas Tobin (4848271)
Susana Recio (6431642)
Jonas Bergh (23551)
Thomas Hatschek (22685)
Joel Parker (17174)
Carol Sartorius (6431645)
Charles Perou (3530138)
Mikhail Dozmorov (4630)
J. Harrell (6413768)

March 2019

Genes upregulated during liver metastasis; cancer and organ-specific changes. DESeq2 was used to ide...

Additional file 5: of Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line

Naresh Jayavelu (3473552)
Nadav Bar (248166)

December 2015

Statistically significant biological pathways affected by differentially expressed TGs in breast can...

Additional file 9: of Separation of breast cancer and organ microenvironment transcriptomes in metastases

Mohammad Alzubi (6431630)
Tia Turner (6431633)
Amy Olex (6431636)
Sahib Sohal (6431639)
Nicholas Tobin (4848271)
Susana Recio (6431642)
Jonas Bergh (23551)
Thomas Hatschek (22685)
Joel Parker (17174)
Carol Sartorius (6431645)
Charles Perou (3530138)
Mikhail Dozmorov (4630)
J. Harrell (6413768)

March 2019

Genes upregulated during lung metastasis; cancer and organ-specific changes. DESeq2 was used to iden...

Additional file 2: Dataset S1. of Integrated transcriptomics and metabolomics analysis to characterize cold stress responses in Nicotiana tabacum

Jingjing Jin (1277538)
Hui Zhang (7197)
Jianfeng Zhang (219107)
Pingping Liu (313822)
Xia Chen (299366)
Zefeng Li (636009)
Yalong Xu (4216729)
Peng Lu (158125)
Peijian Cao (83497)

June 2017

RNA-seq assembly results and expression analysis from various tissues. (XLSX 38411Â kb

Additional file 2: of Downregulation of histone H2A and H2B pathways is associated with anthracycline sensitivity in breast cancer

Marsela Braunstein (3440615)
Linda Liao (3440618)
Nicola Lyttle (3440624)
Nazleen Lobo (623561)
Karen Taylor (2317915)
Paul Krzyzanowski (3440609)
Irina Kalatskaya (3440600)
Cindy Yao (3440612)
Lincoln Stein (14330)
Paul Boutros (196570)
Christopher Twelves (3440627)
Richard Marcellus (2554267)
John Bartlett (602286)
Melanie Spears (3440621)

February 2016

Description of mRNA abundance data processing, module dysregulation score (MDS) and survival modelli...

Additional file 1: of A mathematical model as a tool to identify microRNAs with highest impact on transcriptome changes

Marzena Mura (6309653)
Roman Jaksik (6309656)
Anna Lalik (6309659)
Krzysztof Biernacki (1695766)
Marek Kimmel (39636)
Joanna Rzeszowska-Wolny (286036)
Krzysztof Fujarewicz (286030)

February 2019

Table S1. Summary of datasetÂ at our disposal downloaded from ArrayExpress database. Table includes ...

Additional file 1: of The transcriptome landscape of the carcinogenic treatment response in the blind mole rat: insights into cancer resistance mechanisms

Robert Altwasser (793861)
Arnon Paz (209967)
Abraham Korol (209962)
Irena Manov (3442250)
Aaron Avivi (209968)
Imad Shams (3442244)

January 2019

Table S1. RNA-Expression of Spalax. RNA expression divided between the different samples. Table S2. ...

Additional file 6: of Integrative analysis of the microRNA-mRNA response to radiochemotherapy in primary head and neck squamous cell carcinoma cells

Isolde Summerer (3509534)
Julia Hess (3140769)
Adriana Pitea (3509537)
Kristian Unger (2814205)
Ludwig Hieber (3509531)
Martin Selmansberger (3140772)
Kirsten Lauber (2734903)
Horst Zitzelsberger (626351)

September 2015

Significantly deregulated mRNAs in primary HN1957 after in vitro radiochemotherapy treatment. (PDF 1...

Additional file 9: Figure S8. of A gene expression signature identifying transient DNMT1 depletion as a causal factor of cancer-germline gene activation in melanoma

Julie Cannuyer (587767)
AurĂŠlie Van Tongelen (3585698)
Axelle Loriot (587768)
Charles De Smet (459307)

October 2015

shRNA-dependent inhibition of RB1, but not of p107 and p130, induces up-regulation of ICCG genes in ...

Additional file 2: of Imprinted and ancient gene: a potential mediator of cancer cell survival during tryptophan deprivation

Petr Tomek (1655677)
Shanti Gore (6004430)
Chloe Potts (6004433)
Cristin Print (6004436)
Michael Black (246211)
Ariane Hallermayr (6004439)
Michael Kilian (6004442)
Evelyn Sattlegger (59585)
Lai-Ming Ching (2481022)

November 2018

Association of IMPACT copy number (x-axis) and a mean IMPACT promoter methylation (y-axis; Î˛-value)...

Additional file 1: Table S1. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Alexandra Kalmár (123738)
Bálint Péterfia (130981)
Péter Hollósi (155769)
Orsolya Galamb (123720)
Sándor Spisák (123726)
Barnabás Wichmann (123721)
András Bodor (439486)
Kinga Tóth (123732)
Árpád Patai (785267)
Gábor Valcz (466332)
Zsófia Nagy (3515417)
Vivien Kubák (3515414)
Zsolt Tulassay (123741)
Ilona Kovalszky (130989)
Béla Molnár (123745)

October 2015

Clinical data of the analysed gene expression datasets (GSE4183, GSE37364, GSE10714 and GSE15960). (...

Additional file 1: of Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells

Abstract

Extracted data

Additional file 1: of Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells

Abstract

Extracted data

Related items

Related items