Additional file 7: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissues

Jehl, Frédéric
Muret, Kévin
Bernard, Maria
Esquerré, Diane
Acloque, Hervé
Giuffra, Elisabetta
Djebali, Sarah
Foissac, Sylvain
Derrien, Thomas
Zerjal, Tatiana
Klopp, Christophe,
Lagarrigue, Sandrine

January 2019

International audienceLong non-coding RNAs (lncRNAs) appear as key regulators of gene expression thr...

Transcriptome Analysis and Characterization of Long Non-Coding RNAs in Chicken Adipose Tissue

Kimathi, Boniface Muthuri

January 2020

Long non-coding RNAs (lncRNAs) are non-protein coding transcripts that are more than 200 nucleotides...

MOESM2 of Long noncoding RNA repertoire in chicken liver and adipose tissue

Kévin Muret (3629450)
Christophe Klopp (120981)
Valentin Wucher (3629447)
Diane Esquerré (86529)
Fabrice Legeai (65391)
Frédéric Lecerf (116587)
Colette Désert (647688)
Morgane Boutin (647687)
Frédéric Jehl (3629453)
Hervé Acloque (478386)
Elisabetta Giuffra (122002)
Sarah Djebali (189529)
Sylvain Foissac (26958)
Thomas Derrien (62244)
Sandrine Lagarrigue (214977)

January 2017

Additional file 2: Table S1. LncRNA transcripts (2412) and lncRNA genes (1670) and their classes acc...

Additional file 3: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S3. Sequence information of all expressed lncRNAs found in the present study. (FA 69436Â kb

Additional file 9: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S9. LncRNAs and its potential target genes that are involved in some key pathways related to t...

Additional file 5: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S5. Summary of differentially expressed lncRNAs between mature livers and immature livers in c...

Additional file 4: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S4. Summary of differentially expressed protein-coding genes between mature livers and immatur...

Additional file 1: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S1. Summary of protein-coding genes identified in the chicken liver libraries. (XLSX 4278Â kb

Additional file 8: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S8. GO enrichment analysis (Pâ<â0.05) of differentially expressed protein-coding genes tar...

Additional file 2: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S2. Summary of lncRNAs identified in the chicken liver libraries. 1. Class code: “x” represent...

Additional file 6: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S6. GO enrichment analysis (Pâ<â0.05) of the differentially expressed mRNAs. S gene number...

Additional file 11: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Expression of Chicken LncRNAs. FPKM values for all lncRNAs from each RNA-seq library (2 libraries pe...

Systematic screening of long intergenic noncoding RNAs expressed during chicken embryogenesis

Junxiao Ren
Quanlin Li
Qinghe Zhang
Michael Clinton
Congjiao Sun
Ning Yang

July 2021

ABSTRACT: Long noncoding RNAs (lncRNAs) have emerged as important regulators of many biological proc...

Supplementary Material for: Transcriptome Profile Analysis Reveals an Estrogen Induced LncRNA Associated with Lipid Metabolism and Carcass Traits in Chickens (Gallus Gallus)

Li H. (2886434)
Gu Z. (4273519)
Yang L. (3635365)
Tian Y. (4154389)
Kang X. (5919407)
Liu X. (3033234)

November 2018

Background/Aims: Accumulating evidences have demonstrated that long noncoding RNAs (lncRNA) play imp...

Additional file 1: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Sequences of Chicken LncRNAs. A fasta file containing all the lncRNA sequences from chickens. (FA 34...

An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissues

Jehl, Frédéric
Muret, Kévin
Bernard, Maria
Esquerré, Diane
Acloque, Hervé
Giuffra, Elisabetta
Djebali, Sarah
Foissac, Sylvain
Derrien, Thomas
Zerjal, Tatiana
Klopp, Christophe,
Lagarrigue, Sandrine

January 2019

International audienceLong non-coding RNAs (lncRNAs) appear as key regulators of gene expression thr...

Transcriptome Analysis and Characterization of Long Non-Coding RNAs in Chicken Adipose Tissue

Kimathi, Boniface Muthuri

January 2020

Long non-coding RNAs (lncRNAs) are non-protein coding transcripts that are more than 200 nucleotides...

MOESM2 of Long noncoding RNA repertoire in chicken liver and adipose tissue

Kévin Muret (3629450)
Christophe Klopp (120981)
Valentin Wucher (3629447)
Diane Esquerré (86529)
Fabrice Legeai (65391)
Frédéric Lecerf (116587)
Colette Désert (647688)
Morgane Boutin (647687)
Frédéric Jehl (3629453)
Hervé Acloque (478386)
Elisabetta Giuffra (122002)
Sarah Djebali (189529)
Sylvain Foissac (26958)
Thomas Derrien (62244)
Sandrine Lagarrigue (214977)

January 2017

Additional file 2: Table S1. LncRNA transcripts (2412) and lncRNA genes (1670) and their classes acc...

Additional file 3: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S3. Sequence information of all expressed lncRNAs found in the present study. (FA 69436Â kb

Additional file 9: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S9. LncRNAs and its potential target genes that are involved in some key pathways related to t...

Additional file 5: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S5. Summary of differentially expressed lncRNAs between mature livers and immature livers in c...

Additional file 4: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S4. Summary of differentially expressed protein-coding genes between mature livers and immatur...

Additional file 1: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S1. Summary of protein-coding genes identified in the chicken liver libraries. (XLSX 4278Â kb

Additional file 8: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S8. GO enrichment analysis (Pâ<â0.05) of differentially expressed protein-coding genes tar...

Additional file 2: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S2. Summary of lncRNAs identified in the chicken liver libraries. 1. Class code: “x” represent...

Additional file 6: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Shengru Wu (5454404)
Yanli Liu (198140)
Wei Guo (2766208)
Xi Cheng (296756)
Xiaochun Ren (5454401)
Si Chen (164760)
Xueyuan Li (1546183)
Yongle Duan (5454398)
Qingzhu Sun (355577)
Xiaojun Yang (161791)

June 2018

Table S6. GO enrichment analysis (Pâ<â0.05) of the differentially expressed mRNAs. S gene number...

Additional file 11: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Expression of Chicken LncRNAs. FPKM values for all lncRNAs from each RNA-seq library (2 libraries pe...

Systematic screening of long intergenic noncoding RNAs expressed during chicken embryogenesis

Junxiao Ren
Quanlin Li
Qinghe Zhang
Michael Clinton
Congjiao Sun
Ning Yang

July 2021

ABSTRACT: Long noncoding RNAs (lncRNAs) have emerged as important regulators of many biological proc...

Supplementary Material for: Transcriptome Profile Analysis Reveals an Estrogen Induced LncRNA Associated with Lipid Metabolism and Carcass Traits in Chickens (Gallus Gallus)

Li H. (2886434)
Gu Z. (4273519)
Yang L. (3635365)
Tian Y. (4154389)
Kang X. (5919407)
Liu X. (3033234)

November 2018

Background/Aims: Accumulating evidences have demonstrated that long noncoding RNAs (lncRNA) play imp...

Additional file 1: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Sequences of Chicken LncRNAs. A fasta file containing all the lncRNA sequences from chickens. (FA 34...

An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissues

Jehl, Frédéric
Muret, Kévin
Bernard, Maria
Esquerré, Diane
Acloque, Hervé
Giuffra, Elisabetta
Djebali, Sarah
Foissac, Sylvain
Derrien, Thomas
Zerjal, Tatiana
Klopp, Christophe,
Lagarrigue, Sandrine

January 2019

International audienceLong non-coding RNAs (lncRNAs) appear as key regulators of gene expression thr...

Transcriptome Analysis and Characterization of Long Non-Coding RNAs in Chicken Adipose Tissue

Kimathi, Boniface Muthuri

January 2020

Long non-coding RNAs (lncRNAs) are non-protein coding transcripts that are more than 200 nucleotides...

MOESM2 of Long noncoding RNA repertoire in chicken liver and adipose tissue

Kévin Muret (3629450)
Christophe Klopp (120981)
Valentin Wucher (3629447)
Diane Esquerré (86529)
Fabrice Legeai (65391)
Frédéric Lecerf (116587)
Colette Désert (647688)
Morgane Boutin (647687)
Frédéric Jehl (3629453)
Hervé Acloque (478386)
Elisabetta Giuffra (122002)
Sarah Djebali (189529)
Sylvain Foissac (26958)
Thomas Derrien (62244)
Sandrine Lagarrigue (214977)

January 2017

Additional file 2: Table S1. LncRNA transcripts (2412) and lncRNA genes (1670) and their classes acc...

Additional file 7: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Abstract

Extracted data

Additional file 7: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Abstract

Extracted data

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