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Distribution of HIV-1 subtypes and recombinants in samples with ATCC and viroseq discordant genotyping successes.

Audu Rosemary (5464970)
Onwuamah Chika (5464961)
Okpokwu Jonathan (5464964)
Imade Godwin (5465006)
Odaibo Georgina (5464997)
Okwuraiwe Azuka (5465009)
Musa Zaidat (5465015)
Chebu Philippe (5464991)
Ezechi Oliver (5464976)
Agbaji Oche (5464988)
Olaleye David (5464979)
Samuel Jay (5464967)
Dalhatu Ibrahim (5465012)
Ahmed Mukhtar (5464982)
DeVos Joshua (5464994)
Yang Chunfu (5464985)
Raizes Elliot (5464973)
Chaplin Beth (5465003)
Kanki Phyllis (5465000)
Idigbe Emmanuel (5465018)

Publication date

June 2018

DOI

10.1371/journal.pone.0198246.t003

Abstract

<p>Distribution of HIV-1 subtypes and recombinants in samples with ATCC and viroseq discordant genotyping successes.</p

Extracted data

Related items

Summary analysis of frequency of intra-subtype recombination in 38 subjects from the combined sets (early and later time points) HIV-1 quasispecies.

Ireen E. Kiwelu (124350)
Vladimir Novitsky (124352)
Lauren Margolin (124355)
Jeannie Baca (124358)
Rachel Manongi (124361)
Noel Sam (124363)
John Shao (124364)
Mary F. McLane (124367)
Saidi H. Kapiga (124370)
M. Essex (124372)

August 2013

<p>The percentages (%) of unique intra-subtype recombinants were calculated from the HIV-1 intra- su...

HIV-1 subtype distribution in env, gag, pol and combined regions; and virological and immunological status of HIV-1 incident cases at enrolment.

Deogratius Ssemwanga (444460)
Rebecca N. Nsubuga (322027)
Billy N. Mayanja (444461)
Frederick Lyagoba (444462)
Brian Magambo (444463)
Dave Yirrell (444464)
Lieve Van der Paal (350457)
Heiner Grosskurth (37057)
Pontiano Kaleebu (62293)

August 2013

&&<p>Proportion of subtype D is greater than that of A (p<0.01) and of A/D (p<0.01).</p><p>+one-side...

Distribution of HIV-1 subtypes among patients with severe sepsis.

Najah I. Doka (301213)
Shevin T. Jacob (301214)
Patrick Banura (301216)
Christopher C. Moore (121084)
David Meya (301219)
Harriet Mayanja-Kizza (78637)
Steven J. Reynolds (247956)
W. Michael Scheld (301223)
Wen Yuan (301225)

February 2013

<p>Subtype A (n = 81), D (n = 29), AD (n = 53), C (n = 3), AC (n = 2), AB (n = 2), BD (n = 3), CD (n...

A: Distribution of unique intra-subtype recombinant variants in subject 168 infected with HIV-1 subtype A1.

Ireen E. Kiwelu (124350)
Vladimir Novitsky (124352)
Lauren Margolin (124355)
Jeannie Baca (124358)
Rachel Manongi (124361)
Noel Sam (124363)
John Shao (124364)
Mary F. McLane (124367)
Saidi H. Kapiga (124370)
M. Essex (124372)

August 2013

<p>The number of unique recombinant variants was 20 (53%). The enriched recombinant variants were re...

Distribution of major HIV-1 subtypes in the six study sites as analyzed by Multi-region Hybridization Assay (MHA).

Ogbonnaya S. Njoku (3389876)
Mark M. Manak (559292)
Robert J. O’Connell (519953)
Ashley L. W. Shutt (3389900)
Jennifer A. Malia (3389885)
Richard A. Heipertz Jr (3389891)
Sodsai Tovanabutra (364366)
Mark J. Milazzo (3389894)
Gideon Akindiran Akintunde (3389888)
Abraham S. Alabi (3389906)
Aminu Suleiman (3389882)
Amos A. Ogundeji (3389873)
Terfa S. Kene (3389909)
Robbie Nelson (3389903)
Ojor R. Ayemoba (3389879)
Darrell E. Singer (3389897)
Merlin L. Robb (132305)
Sheila A. Peel (400270)
Nelson L. Michael (132309)

December 2016

<p>Distribution of major HIV-1 subtypes in the six study sites as analyzed by Multi-region Hybridiza...

Distribution of HIV-1 subtypes and circulating recombinant forms (CRFs) in different groups of patients recruited in this cohort study.

Szu-Wei Huang (504500)
Sheng-Fan Wang (673177)
Yu-Ting Lin (462865)
Chia-Hung Yen (473492)
Chih-Hao Lee (534196)
Wing-Wai Wong (256930)
Hung-Chin Tsai (673178)
Chia-Jui Yang (527603)
Bor-Shen Hu (673179)
Yu-Huei Lin (643341)
Chin-Tien Wang (331047)
Jaang-Jiun Wang (253626)
Zixin Hu (673180)
Daniel R. Kuritzkes (214840)
Yen-Hsu Chen (314564)
Yi-Ming Arthur Chen (473497)

December 2014

a<p>Includes 4 heterosexual female infected with subtype B, 3 heterosexual female infected with CRF0...

Distribution of HIV-1 subtypes in patients by sex and CD<sub>4</sub> cell counts.

Georges Teto (419648)
Georgette D. Kanmogne (419649)
Judith N. Torimiro (419650)
George Alemnji (419651)
Flore N. Nguemaim (419652)
Désiré Takou (419653)
Aubin Nanfack (419654)
Asonganyi Tazoacha (419655)

June 2013

<p>Distribution of HIV-1 subtypes in patients by sex and CD<sub>4</sub> cell counts.</p

Distribution of HIV-1 subtypes and recombinants in the clinical cohorts based on two genes.

Ujjwal Neogi (286198)
Irene Bontell (317398)
Anita Shet (67486)
Ayesha De Costa (317399)
Soham Gupta (317400)
Vishal Diwan (317401)
Ranbir S. Laishram (317402)
Ajay Wanchu (85051)
Udaykumar Ranga (317403)
Akhil C. Banerjea (256535)
Anders Sönnerborg (153581)

February 2013

<p>The regions [southern (Karnataka, Tamil Nadu and Andhra Pradesh), northern (Punjab and Haryana), ...

HIV-1 subtypes and circulating recombinant forms (CRFs) from samples genotyped by the optimized in-house assay.

Zhiyong Zhou (339121)
Nick Wagar (339122)
Joshua R. DeVos (339123)
Erin Rottinghaus (339124)
Karidia Diallo (339125)
Duc B. Nguyen (339126)
Orji Bassey (339127)
Richard Ugbena (339128)
Nellie Wadonda-Kabondo (339129)
Michelle S. McConnell (339130)
Isaac Zulu (95507)
Benson Chilima (339131)
John Nkengasong (339132)
Chunfu Yang (293864)

February 2013

<p>HIV-1 subtypes and circulating recombinant forms (CRFs) from samples genotyped by the optimized i...

Regional distribution of HIV-1 subtypes and recombinants.

Stephen J. Kent (90625)
David A. Cooper (198765)
Mean Chhi Vun (361608)
Yiming Shao (80425)
Linqi Zhang (350238)
Nirmal Ganguly (361609)
Budiman Bela (361610)
Hiko Tamashiro (361611)
Rossana Ditangco (361612)
Supachai Rerks-Ngarm (190865)
Punnee Pitisuttithum (190857)
Nguyen Van Kinh (129736)
Alan Bernstein (339158)
Saladin Osmanov (165814)

February 2013

<p>The relative proportion of each subtype/recombinant is shown in the pie chart for each country. T...

Distribution of HIV-1 subtypes in the HIV databases for thirteen FSU countries (www.hiv.lanl.gov).

Lazzat Aibekova (4814268)
Brian Foley (3482021)
Gonzalo Hortelano (4814262)
Muhammad Raees (4814259)
Sabit Abdraimov (4814271)
Rakhmanbek Toichuev (4814265)
Syed Ali (64244)

February 2018

<p>Distribution of HIV-1 subtypes in the HIV databases for thirteen FSU countries (<a href="http://w...

Detailed distribution of HIV-1 variants found in the Angolan population.

Joana Morais Afonso (309443)
Gonzalo Bello (138839)
Monick L. Guimarães (309446)
Marta Sojka (309448)
Mariza G. Morgado (155854)

February 2013

<p>a) Frequency of “pure” subtypes, inter-subtype recombinants and unclassified (U) sequences within...

Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004.

Hemelaar, J
Gouws, E
Ghys, PD
Osmanov, S

October 2006

OBJECTIVE: To estimate the global and regional distribution of HIV-1 subtypes and recombinants in 20...

Distribution of HIV-1 subtypes among participants, by recency of infection, Western Kenya, October 2003-May 2005.

Clement Zeh (226174)
Seth C. Inzaule (1804327)
Pascale Ondoa (311809)
Lillian G. Nafisa (1804330)
Alex Kasembeli (1804333)
Fredrick Otieno (721137)
Hilde Vandenhoudt (349420)
Pauli N. Amornkul (226221)
Lisa A. Mills (450378)
John N. Nkengasong (226211)

February 2016

<p><b>(A)</b> Long term (>239 days) (B) recent infections (≤239 days) (Fig 1B). A, C, D, G represent...

Distribution of HIV-1 subtypes in Sweden between 1983 and 2012.

Ujjwal Neogi (286198)
Amanda Häggblom (393667)
Michele Santacatterina (553721)
Göran Bratt (176495)
Magnus Gisslén (176506)
Jan Albert (176517)
Anders Sonnerborg (5659342)

June 2014

<p>Final dataset included <i>pol</i> sequences (length >500 nt) from 3967 HIV-1 infected patients. H...

Summary analysis of frequency of intra-subtype recombination in 38 subjects from the combined sets (early and later time points) HIV-1 quasispecies.

Ireen E. Kiwelu (124350)
Vladimir Novitsky (124352)
Lauren Margolin (124355)
Jeannie Baca (124358)
Rachel Manongi (124361)
Noel Sam (124363)
John Shao (124364)
Mary F. McLane (124367)
Saidi H. Kapiga (124370)
M. Essex (124372)

August 2013

<p>The percentages (%) of unique intra-subtype recombinants were calculated from the HIV-1 intra- su...

HIV-1 subtype distribution in env, gag, pol and combined regions; and virological and immunological status of HIV-1 incident cases at enrolment.

Deogratius Ssemwanga (444460)
Rebecca N. Nsubuga (322027)
Billy N. Mayanja (444461)
Frederick Lyagoba (444462)
Brian Magambo (444463)
Dave Yirrell (444464)
Lieve Van der Paal (350457)
Heiner Grosskurth (37057)
Pontiano Kaleebu (62293)

August 2013

&&<p>Proportion of subtype D is greater than that of A (p<0.01) and of A/D (p<0.01).</p><p>+one-side...

Distribution of HIV-1 subtypes among patients with severe sepsis.

Najah I. Doka (301213)
Shevin T. Jacob (301214)
Patrick Banura (301216)
Christopher C. Moore (121084)
David Meya (301219)
Harriet Mayanja-Kizza (78637)
Steven J. Reynolds (247956)
W. Michael Scheld (301223)
Wen Yuan (301225)

February 2013

<p>Subtype A (n = 81), D (n = 29), AD (n = 53), C (n = 3), AC (n = 2), AB (n = 2), BD (n = 3), CD (n...

A: Distribution of unique intra-subtype recombinant variants in subject 168 infected with HIV-1 subtype A1.

Ireen E. Kiwelu (124350)
Vladimir Novitsky (124352)
Lauren Margolin (124355)
Jeannie Baca (124358)
Rachel Manongi (124361)
Noel Sam (124363)
John Shao (124364)
Mary F. McLane (124367)
Saidi H. Kapiga (124370)
M. Essex (124372)

August 2013

<p>The number of unique recombinant variants was 20 (53%). The enriched recombinant variants were re...

Distribution of major HIV-1 subtypes in the six study sites as analyzed by Multi-region Hybridization Assay (MHA).

Ogbonnaya S. Njoku (3389876)
Mark M. Manak (559292)
Robert J. O’Connell (519953)
Ashley L. W. Shutt (3389900)
Jennifer A. Malia (3389885)
Richard A. Heipertz Jr (3389891)
Sodsai Tovanabutra (364366)
Mark J. Milazzo (3389894)
Gideon Akindiran Akintunde (3389888)
Abraham S. Alabi (3389906)
Aminu Suleiman (3389882)
Amos A. Ogundeji (3389873)
Terfa S. Kene (3389909)
Robbie Nelson (3389903)
Ojor R. Ayemoba (3389879)
Darrell E. Singer (3389897)
Merlin L. Robb (132305)
Sheila A. Peel (400270)
Nelson L. Michael (132309)

December 2016

<p>Distribution of major HIV-1 subtypes in the six study sites as analyzed by Multi-region Hybridiza...

Distribution of HIV-1 subtypes and circulating recombinant forms (CRFs) in different groups of patients recruited in this cohort study.

Szu-Wei Huang (504500)
Sheng-Fan Wang (673177)
Yu-Ting Lin (462865)
Chia-Hung Yen (473492)
Chih-Hao Lee (534196)
Wing-Wai Wong (256930)
Hung-Chin Tsai (673178)
Chia-Jui Yang (527603)
Bor-Shen Hu (673179)
Yu-Huei Lin (643341)
Chin-Tien Wang (331047)
Jaang-Jiun Wang (253626)
Zixin Hu (673180)
Daniel R. Kuritzkes (214840)
Yen-Hsu Chen (314564)
Yi-Ming Arthur Chen (473497)

December 2014

a<p>Includes 4 heterosexual female infected with subtype B, 3 heterosexual female infected with CRF0...

Distribution of HIV-1 subtypes in patients by sex and CD<sub>4</sub> cell counts.

Georges Teto (419648)
Georgette D. Kanmogne (419649)
Judith N. Torimiro (419650)
George Alemnji (419651)
Flore N. Nguemaim (419652)
Désiré Takou (419653)
Aubin Nanfack (419654)
Asonganyi Tazoacha (419655)

June 2013

<p>Distribution of HIV-1 subtypes in patients by sex and CD<sub>4</sub> cell counts.</p

Distribution of HIV-1 subtypes and recombinants in the clinical cohorts based on two genes.

Ujjwal Neogi (286198)
Irene Bontell (317398)
Anita Shet (67486)
Ayesha De Costa (317399)
Soham Gupta (317400)
Vishal Diwan (317401)
Ranbir S. Laishram (317402)
Ajay Wanchu (85051)
Udaykumar Ranga (317403)
Akhil C. Banerjea (256535)
Anders Sönnerborg (153581)

February 2013

<p>The regions [southern (Karnataka, Tamil Nadu and Andhra Pradesh), northern (Punjab and Haryana), ...

HIV-1 subtypes and circulating recombinant forms (CRFs) from samples genotyped by the optimized in-house assay.

Zhiyong Zhou (339121)
Nick Wagar (339122)
Joshua R. DeVos (339123)
Erin Rottinghaus (339124)
Karidia Diallo (339125)
Duc B. Nguyen (339126)
Orji Bassey (339127)
Richard Ugbena (339128)
Nellie Wadonda-Kabondo (339129)
Michelle S. McConnell (339130)
Isaac Zulu (95507)
Benson Chilima (339131)
John Nkengasong (339132)
Chunfu Yang (293864)

February 2013

<p>HIV-1 subtypes and circulating recombinant forms (CRFs) from samples genotyped by the optimized i...

Regional distribution of HIV-1 subtypes and recombinants.

Stephen J. Kent (90625)
David A. Cooper (198765)
Mean Chhi Vun (361608)
Yiming Shao (80425)
Linqi Zhang (350238)
Nirmal Ganguly (361609)
Budiman Bela (361610)
Hiko Tamashiro (361611)
Rossana Ditangco (361612)
Supachai Rerks-Ngarm (190865)
Punnee Pitisuttithum (190857)
Nguyen Van Kinh (129736)
Alan Bernstein (339158)
Saladin Osmanov (165814)

February 2013

<p>The relative proportion of each subtype/recombinant is shown in the pie chart for each country. T...

Distribution of HIV-1 subtypes in the HIV databases for thirteen FSU countries (www.hiv.lanl.gov).

Lazzat Aibekova (4814268)
Brian Foley (3482021)
Gonzalo Hortelano (4814262)
Muhammad Raees (4814259)
Sabit Abdraimov (4814271)
Rakhmanbek Toichuev (4814265)
Syed Ali (64244)

February 2018

<p>Distribution of HIV-1 subtypes in the HIV databases for thirteen FSU countries (<a href="http://w...

Detailed distribution of HIV-1 variants found in the Angolan population.

Joana Morais Afonso (309443)
Gonzalo Bello (138839)
Monick L. Guimarães (309446)
Marta Sojka (309448)
Mariza G. Morgado (155854)

February 2013

<p>a) Frequency of “pure” subtypes, inter-subtype recombinants and unclassified (U) sequences within...

Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004.

Hemelaar, J
Gouws, E
Ghys, PD
Osmanov, S

October 2006

OBJECTIVE: To estimate the global and regional distribution of HIV-1 subtypes and recombinants in 20...

Distribution of HIV-1 subtypes among participants, by recency of infection, Western Kenya, October 2003-May 2005.

Clement Zeh (226174)
Seth C. Inzaule (1804327)
Pascale Ondoa (311809)
Lillian G. Nafisa (1804330)
Alex Kasembeli (1804333)
Fredrick Otieno (721137)
Hilde Vandenhoudt (349420)
Pauli N. Amornkul (226221)
Lisa A. Mills (450378)
John N. Nkengasong (226211)

February 2016

<p><b>(A)</b> Long term (>239 days) (B) recent infections (≤239 days) (Fig 1B). A, C, D, G represent...

Distribution of HIV-1 subtypes in Sweden between 1983 and 2012.

Ujjwal Neogi (286198)
Amanda Häggblom (393667)
Michele Santacatterina (553721)
Göran Bratt (176495)
Magnus Gisslén (176506)
Jan Albert (176517)
Anders Sonnerborg (5659342)

June 2014

<p>Final dataset included <i>pol</i> sequences (length >500 nt) from 3967 HIV-1 infected patients. H...

Summary analysis of frequency of intra-subtype recombination in 38 subjects from the combined sets (early and later time points) HIV-1 quasispecies.

Ireen E. Kiwelu (124350)
Vladimir Novitsky (124352)
Lauren Margolin (124355)
Jeannie Baca (124358)
Rachel Manongi (124361)
Noel Sam (124363)
John Shao (124364)
Mary F. McLane (124367)
Saidi H. Kapiga (124370)
M. Essex (124372)

August 2013

<p>The percentages (%) of unique intra-subtype recombinants were calculated from the HIV-1 intra- su...

HIV-1 subtype distribution in env, gag, pol and combined regions; and virological and immunological status of HIV-1 incident cases at enrolment.

Deogratius Ssemwanga (444460)
Rebecca N. Nsubuga (322027)
Billy N. Mayanja (444461)
Frederick Lyagoba (444462)
Brian Magambo (444463)
Dave Yirrell (444464)
Lieve Van der Paal (350457)
Heiner Grosskurth (37057)
Pontiano Kaleebu (62293)

August 2013

&&<p>Proportion of subtype D is greater than that of A (p<0.01) and of A/D (p<0.01).</p><p>+one-side...

Distribution of HIV-1 subtypes among patients with severe sepsis.

Najah I. Doka (301213)
Shevin T. Jacob (301214)
Patrick Banura (301216)
Christopher C. Moore (121084)
David Meya (301219)
Harriet Mayanja-Kizza (78637)
Steven J. Reynolds (247956)
W. Michael Scheld (301223)
Wen Yuan (301225)

February 2013

<p>Subtype A (n = 81), D (n = 29), AD (n = 53), C (n = 3), AC (n = 2), AB (n = 2), BD (n = 3), CD (n...