Additional file 2: of A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Additional file 2: Figure S1. of Gene Set Enrichment Analyses: lessons learned from the heart failure phenotype

Vinicius Tragante (113546)
Johannes Gho (4051384)
Janine Felix (3535616)
Ramachandran Vasan (705059)
Nicholas Smith (3160875)
Benjamin Voight (120870)
Colin Palmer (165015)
Pim van der Harst (65060)
Jason Moore (377082)
Folkert Asselbergs (3246126)

May 2017

Overlapping genes among significant pathways for hearf failure before data processing. (PDF 145Â kb

Additional file 2: of Identification of new biomarkers for Acute Respiratory Distress Syndrome by expression-based genome-wide association study

Dmitry Grigoryev (654995)
Dilyara Cheranova (183213)
Suman Chaudhary (349511)
Daniel Heruth (3461693)
Li Zhang (8200)
Shui Ye (3461696)

August 2015

Table S2. Chi-square values of cross-referenced genes. Given that different microarray platforms hav...

Additional file 2: of The association between interleukin-6 gene -174G/C single nucleotide polymorphism and sepsis: an updated meta-analysis with trial sequential analysis

Yao Chen (149006)
Yanyan Hu (337017)
Zhenju Song (131736)

February 2019

Supplementary figures. The figures of pool analysis, eggerâs test, sensitivity analysis and trial ...

Additional file 1: of A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Natalia Hernandez-Pacheco (5495360)
Beatriz Guillen-Guio (5495366)
Marialbert Acosta-Herrera (533408)
Maria Pino-Yanes (3073896)
Almudena Corrales (226103)
Alfonso Ambrós (3495518)
Leonor Nogales (3739390)
Arturo Muriel (238427)
Elena González-Higueras (3494672)
Francisco Diaz-Dominguez (5495363)
Elizabeth Zavala (238449)
Javier Belda (3494642)
Shwu-Fan Ma (3621)
Jesús Villar (984)
Carlos Flores (4224)

July 2018

Table S1. Significant probe sets in the microarray-based differential gene expression analysis compa...

Additional file 6: of A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Natalia Hernandez-Pacheco (5495360)
Beatriz Guillen-Guio (5495366)
Marialbert Acosta-Herrera (533408)
Maria Pino-Yanes (3073896)
Almudena Corrales (226103)
Alfonso AmbrĂłs (5495372)
Leonor Nogales (3739390)
Arturo Muriel (238427)
Elena GonzĂĄlez-Higueras (5495375)
Francisco Diaz-Dominguez (5495363)
Elizabeth Zavala (238449)
Javier Belda (3494642)
Shwu-Fan Ma (3621)
JesĂşs Villar (5495378)
Carlos Flores (4224)

July 2018

Table 4. ARDS susceptibility association results in the discovery and replication studies. Summary o...

Additional file 3: of A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Natalia Hernandez-Pacheco (5495360)
Beatriz Guillen-Guio (5495366)
Marialbert Acosta-Herrera (533408)
Maria Pino-Yanes (3073896)
Almudena Corrales (226103)
Alfonso AmbrĂłs (5495372)
Leonor Nogales (3739390)
Arturo Muriel (238427)
Elena GonzĂĄlez-Higueras (5495375)
Francisco Diaz-Dominguez (5495363)
Elizabeth Zavala (238449)
Javier Belda (3494642)
Shwu-Fan Ma (3621)
JesĂşs Villar (5495378)
Carlos Flores (4224)

July 2018

Table S3. Protein interaction network analysis (data obtained from Acosta-Herrera et al. PLoS One 20...

Additional file 5: of A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Natalia Hernandez-Pacheco (5495360)
Beatriz Guillen-Guio (5495366)
Marialbert Acosta-Herrera (533408)
Maria Pino-Yanes (3073896)
Almudena Corrales (226103)
Alfonso Ambrós (3495518)
Leonor Nogales (3739390)
Arturo Muriel (238427)
Elena González-Higueras (3494672)
Francisco Diaz-Dominguez (5495363)
Elizabeth Zavala (238449)
Javier Belda (3494642)
Shwu-Fan Ma (3621)
Jesús Villar (984)
Carlos Flores (4224)

July 2018

Table S5. Summary statistics of SNPs located at the pathways with SNPs significantly associated with...

Additional file 8: of Identification of a transcriptome profile associated with improvement of organ function in septic shock patients after early supportive therapy

Matteo Barcella (606697)
Bernardo Bollen Pinto (4224874)
Daniele Braga (1861750)
Francesca D’Avila (3486938)
Federico Tagliaferri (6002069)
Marie-Angelique Cazalis (6002072)
Guillaume Monneret (329582)
Antoine Herpain (5993129)
Karim Bendjelid (3072015)
Cristina Barlassina (136962)

November 2018

Table S6. Trend analysis (Mann–Whitney test) – full table. This table describes the 125 genes exhibi...

Additional file 4: of Identification of a transcriptome profile associated with improvement of organ function in septic shock patients after early supportive therapy

Matteo Barcella (606697)
Bernardo Bollen Pinto (4224874)
Daniele Braga (1861750)
Francesca DâAvila (3486992)
Federico Tagliaferri (6002069)
Marie-Angelique Cazalis (6002072)
Guillaume Monneret (329582)
Antoine Herpain (5993129)
Karim Bendjelid (3072015)
Cristina Barlassina (136962)

November 2018

Table S2. Differentially expressed gene (DEG) T2vsT1 in responder (R) patients. This table describes...

Additional file 1: of Unsupervised gene expression analyses identify IPF-severity correlated signatures, associated genes and biomarkers

Yunguan Wang (4529929)
Jaswanth Yella (4529926)
Jing Chen (4762)
Francis McCormack (4529920)
Satish Madala (4529932)
Anil Jegga (4529923)

October 2017

Figure S1. Gene expression profiles in lung tissues taken from IPF patients were highly heterogeneou...

A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Natalia Hernandez-Pacheco
Beatriz Guillen-Guio
Marialbert Acosta-Herrera
Maria Pino-Yanes
Almudena Corrales
Alfonso Ambrós
Leonor Nogales
Arturo Muriel
Elena González-Higueras
Francisco J. Diaz-Dominguez
Elizabeth Zavala
Javier Belda
Shwu-Fan Ma
Jesús Villar
Carlos Flores
the GEN-SEP Network

July 2018

Abstract Background The acute respiratory distress syndrome (ARDS) is one of the main causes of mort...

Additional file 5: of Identification of a transcriptome profile associated with improvement of organ function in septic shock patients after early supportive therapy

Matteo Barcella (606697)
Bernardo Bollen Pinto (4224874)
Daniele Braga (1861750)
Francesca DâAvila (3486992)
Federico Tagliaferri (6002069)
Marie-Angelique Cazalis (6002072)
Guillaume Monneret (329582)
Antoine Herpain (5993129)
Karim Bendjelid (3072015)
Cristina Barlassina (136962)

November 2018

Table S3. Differentially expressed gene (DEG) T2vsT1 in non-responder (NR) patients. This table desc...

Additional file 4: Table S4. of Differential expression of the Nrf2-linked genes in pediatric septic shock

Jocelyn Grunwell (3564215)
Scott Weiss (16457)
Natalie Cvijanovich (3564200)
Geoffrey Allen (3564209)
Neal Thomas (441332)
Robert Freishtat (3126909)
Nick Anas (516384)
Keith Meyer (309742)
Paul Checchia (3564206)
Thomas Shanley (3564203)
Michael Bigham (3564212)
Julie Fitzgerald (3562409)
Kelli Howard (658414)
Erin Frank (658415)
Kelli Harmon (534863)
Hector Wong (3564218)

September 2015

List of Nrf2-linked gene probes (n =138) corresponding to 92 unique genes differentially regulated b...

Additional file 1: of Rare variants in SOX17 are associated with pulmonary arterial hypertension with congenital heart disease

Na Zhu (331131)
Carrie Welch (5542190)
Jiayao Wang (4096501)
Philip Allen (5542178)
Claudia Gonzaga-Jauregui (269566)
Lijiang Ma (5542181)
Alejandra King (5542157)
Usha Krishnan (5088374)
Erika Rosenzweig (5542154)
D. Dunbar Ivy (5542187)
Eric Austin (5542166)
Rizwan Hamid (480140)
Michael Pauciulo (5542160)
Katie Lutz (5542175)
William Nichols (5542172)
Jeffrey Reid (5542163)
John Overton (51426)
Aris Baras (5542184)
Frederick Dewey (5542169)
Yufeng Shen (239573)
Wendy Chung (82088)

July 2018

Figure S1. Study overview. Figure S2. Depth of sequencing coverage for SOX17. Figure S3. Gene-based ...

Additional file 1: of Endothelial cells from pulmonary endarterectomy specimens possess a high angiogenic potential and express high levels of hepatocyte growth factor

Akira Naito (663843)
Seiichiro Sakao (515628)
Irene Lang (625943)
Norbert Voelkel (6164648)
Takayuki Jujo (515627)
Keiichi Ishida (663844)
Toshihiko Sugiura (653973)
Goro Matsumiya (6164651)
Ichiro Yoshino (741488)
Nobuhiro Tanabe (515632)
Koichiro Tatsumi (395735)

December 2018

The whole data of PCR-array analysis of CTEPH-ECs. The whole data of PCR-array analysis, which compa...

Additional file 2: Figure S1. of Gene Set Enrichment Analyses: lessons learned from the heart failure phenotype

Vinicius Tragante (113546)
Johannes Gho (4051384)
Janine Felix (3535616)
Ramachandran Vasan (705059)
Nicholas Smith (3160875)
Benjamin Voight (120870)
Colin Palmer (165015)
Pim van der Harst (65060)
Jason Moore (377082)
Folkert Asselbergs (3246126)

May 2017

Overlapping genes among significant pathways for hearf failure before data processing. (PDF 145Â kb

Additional file 2: of Identification of new biomarkers for Acute Respiratory Distress Syndrome by expression-based genome-wide association study

Dmitry Grigoryev (654995)
Dilyara Cheranova (183213)
Suman Chaudhary (349511)
Daniel Heruth (3461693)
Li Zhang (8200)
Shui Ye (3461696)

August 2015

Table S2. Chi-square values of cross-referenced genes. Given that different microarray platforms hav...

Additional file 2: of The association between interleukin-6 gene -174G/C single nucleotide polymorphism and sepsis: an updated meta-analysis with trial sequential analysis

Yao Chen (149006)
Yanyan Hu (337017)
Zhenju Song (131736)

February 2019

Supplementary figures. The figures of pool analysis, eggerâs test, sensitivity analysis and trial ...

Additional file 1: of A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Natalia Hernandez-Pacheco (5495360)
Beatriz Guillen-Guio (5495366)
Marialbert Acosta-Herrera (533408)
Maria Pino-Yanes (3073896)
Almudena Corrales (226103)
Alfonso Ambrós (3495518)
Leonor Nogales (3739390)
Arturo Muriel (238427)
Elena González-Higueras (3494672)
Francisco Diaz-Dominguez (5495363)
Elizabeth Zavala (238449)
Javier Belda (3494642)
Shwu-Fan Ma (3621)
Jesús Villar (984)
Carlos Flores (4224)

July 2018

Table S1. Significant probe sets in the microarray-based differential gene expression analysis compa...

Additional file 6: of A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Natalia Hernandez-Pacheco (5495360)
Beatriz Guillen-Guio (5495366)
Marialbert Acosta-Herrera (533408)
Maria Pino-Yanes (3073896)
Almudena Corrales (226103)
Alfonso AmbrĂłs (5495372)
Leonor Nogales (3739390)
Arturo Muriel (238427)
Elena GonzĂĄlez-Higueras (5495375)
Francisco Diaz-Dominguez (5495363)
Elizabeth Zavala (238449)
Javier Belda (3494642)
Shwu-Fan Ma (3621)
JesĂşs Villar (5495378)
Carlos Flores (4224)

July 2018

Table 4. ARDS susceptibility association results in the discovery and replication studies. Summary o...

Additional file 3: of A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Natalia Hernandez-Pacheco (5495360)
Beatriz Guillen-Guio (5495366)
Marialbert Acosta-Herrera (533408)
Maria Pino-Yanes (3073896)
Almudena Corrales (226103)
Alfonso AmbrĂłs (5495372)
Leonor Nogales (3739390)
Arturo Muriel (238427)
Elena GonzĂĄlez-Higueras (5495375)
Francisco Diaz-Dominguez (5495363)
Elizabeth Zavala (238449)
Javier Belda (3494642)
Shwu-Fan Ma (3621)
JesĂşs Villar (5495378)
Carlos Flores (4224)

July 2018

Table S3. Protein interaction network analysis (data obtained from Acosta-Herrera et al. PLoS One 20...

Additional file 5: of A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Natalia Hernandez-Pacheco (5495360)
Beatriz Guillen-Guio (5495366)
Marialbert Acosta-Herrera (533408)
Maria Pino-Yanes (3073896)
Almudena Corrales (226103)
Alfonso Ambrós (3495518)
Leonor Nogales (3739390)
Arturo Muriel (238427)
Elena González-Higueras (3494672)
Francisco Diaz-Dominguez (5495363)
Elizabeth Zavala (238449)
Javier Belda (3494642)
Shwu-Fan Ma (3621)
Jesús Villar (984)
Carlos Flores (4224)

July 2018

Table S5. Summary statistics of SNPs located at the pathways with SNPs significantly associated with...

Additional file 8: of Identification of a transcriptome profile associated with improvement of organ function in septic shock patients after early supportive therapy

Matteo Barcella (606697)
Bernardo Bollen Pinto (4224874)
Daniele Braga (1861750)
Francesca D’Avila (3486938)
Federico Tagliaferri (6002069)
Marie-Angelique Cazalis (6002072)
Guillaume Monneret (329582)
Antoine Herpain (5993129)
Karim Bendjelid (3072015)
Cristina Barlassina (136962)

November 2018

Table S6. Trend analysis (Mann–Whitney test) – full table. This table describes the 125 genes exhibi...

Additional file 4: of Identification of a transcriptome profile associated with improvement of organ function in septic shock patients after early supportive therapy

Matteo Barcella (606697)
Bernardo Bollen Pinto (4224874)
Daniele Braga (1861750)
Francesca DâAvila (3486992)
Federico Tagliaferri (6002069)
Marie-Angelique Cazalis (6002072)
Guillaume Monneret (329582)
Antoine Herpain (5993129)
Karim Bendjelid (3072015)
Cristina Barlassina (136962)

November 2018

Table S2. Differentially expressed gene (DEG) T2vsT1 in responder (R) patients. This table describes...

Additional file 1: of Unsupervised gene expression analyses identify IPF-severity correlated signatures, associated genes and biomarkers

Yunguan Wang (4529929)
Jaswanth Yella (4529926)
Jing Chen (4762)
Francis McCormack (4529920)
Satish Madala (4529932)
Anil Jegga (4529923)

October 2017

Figure S1. Gene expression profiles in lung tissues taken from IPF patients were highly heterogeneou...

A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Natalia Hernandez-Pacheco
Beatriz Guillen-Guio
Marialbert Acosta-Herrera
Maria Pino-Yanes
Almudena Corrales
Alfonso Ambrós
Leonor Nogales
Arturo Muriel
Elena González-Higueras
Francisco J. Diaz-Dominguez
Elizabeth Zavala
Javier Belda
Shwu-Fan Ma
Jesús Villar
Carlos Flores
the GEN-SEP Network

July 2018

Abstract Background The acute respiratory distress syndrome (ARDS) is one of the main causes of mort...

Additional file 5: of Identification of a transcriptome profile associated with improvement of organ function in septic shock patients after early supportive therapy

Matteo Barcella (606697)
Bernardo Bollen Pinto (4224874)
Daniele Braga (1861750)
Francesca DâAvila (3486992)
Federico Tagliaferri (6002069)
Marie-Angelique Cazalis (6002072)
Guillaume Monneret (329582)
Antoine Herpain (5993129)
Karim Bendjelid (3072015)
Cristina Barlassina (136962)

November 2018

Table S3. Differentially expressed gene (DEG) T2vsT1 in non-responder (NR) patients. This table desc...

Additional file 4: Table S4. of Differential expression of the Nrf2-linked genes in pediatric septic shock

Jocelyn Grunwell (3564215)
Scott Weiss (16457)
Natalie Cvijanovich (3564200)
Geoffrey Allen (3564209)
Neal Thomas (441332)
Robert Freishtat (3126909)
Nick Anas (516384)
Keith Meyer (309742)
Paul Checchia (3564206)
Thomas Shanley (3564203)
Michael Bigham (3564212)
Julie Fitzgerald (3562409)
Kelli Howard (658414)
Erin Frank (658415)
Kelli Harmon (534863)
Hector Wong (3564218)

September 2015

List of Nrf2-linked gene probes (n =138) corresponding to 92 unique genes differentially regulated b...

Additional file 1: of Rare variants in SOX17 are associated with pulmonary arterial hypertension with congenital heart disease

Na Zhu (331131)
Carrie Welch (5542190)
Jiayao Wang (4096501)
Philip Allen (5542178)
Claudia Gonzaga-Jauregui (269566)
Lijiang Ma (5542181)
Alejandra King (5542157)
Usha Krishnan (5088374)
Erika Rosenzweig (5542154)
D. Dunbar Ivy (5542187)
Eric Austin (5542166)
Rizwan Hamid (480140)
Michael Pauciulo (5542160)
Katie Lutz (5542175)
William Nichols (5542172)
Jeffrey Reid (5542163)
John Overton (51426)
Aris Baras (5542184)
Frederick Dewey (5542169)
Yufeng Shen (239573)
Wendy Chung (82088)

July 2018

Figure S1. Study overview. Figure S2. Depth of sequencing coverage for SOX17. Figure S3. Gene-based ...

Additional file 1: of Endothelial cells from pulmonary endarterectomy specimens possess a high angiogenic potential and express high levels of hepatocyte growth factor

Akira Naito (663843)
Seiichiro Sakao (515628)
Irene Lang (625943)
Norbert Voelkel (6164648)
Takayuki Jujo (515627)
Keiichi Ishida (663844)
Toshihiko Sugiura (653973)
Goro Matsumiya (6164651)
Ichiro Yoshino (741488)
Nobuhiro Tanabe (515632)
Koichiro Tatsumi (395735)

December 2018

The whole data of PCR-array analysis of CTEPH-ECs. The whole data of PCR-array analysis, which compa...

Additional file 2: Figure S1. of Gene Set Enrichment Analyses: lessons learned from the heart failure phenotype

Vinicius Tragante (113546)
Johannes Gho (4051384)
Janine Felix (3535616)
Ramachandran Vasan (705059)
Nicholas Smith (3160875)
Benjamin Voight (120870)
Colin Palmer (165015)
Pim van der Harst (65060)
Jason Moore (377082)
Folkert Asselbergs (3246126)

May 2017

Overlapping genes among significant pathways for hearf failure before data processing. (PDF 145Â kb

Additional file 2: of Identification of new biomarkers for Acute Respiratory Distress Syndrome by expression-based genome-wide association study

Dmitry Grigoryev (654995)
Dilyara Cheranova (183213)
Suman Chaudhary (349511)
Daniel Heruth (3461693)
Li Zhang (8200)
Shui Ye (3461696)

August 2015

Table S2. Chi-square values of cross-referenced genes. Given that different microarray platforms hav...

Additional file 2: of The association between interleukin-6 gene -174G/C single nucleotide polymorphism and sepsis: an updated meta-analysis with trial sequential analysis

Yao Chen (149006)
Yanyan Hu (337017)
Zhenju Song (131736)

February 2019

Supplementary figures. The figures of pool analysis, eggerâs test, sensitivity analysis and trial ...

Additional file 2: of A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Abstract

Extracted data

Additional file 2: of A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome

Abstract

Extracted data

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