Additional file 7: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Table_1_Transcriptomic analysis of seed development in Paysonia auriculata (Brassicaceae) identifies genes involved in hydroxy fatty acid biosynthesis.xlsx

Hao Hu (111737)
Armond Swift (14422557)
Margarita Mauro-Herrera (258686)
James Borrone (14422560)
Guadalupe Borja (14422563)
Andrew N. Doust (3176982)

January 2023

Paysonia auriculata (Brassicaceae) produces multiple hydroxy fatty acids as major components of the ...

Additional file 6: of Transcriptome analysis reveals crucial genes involved in the biosynthesis of nervonic acid in woody Malania oleifera oilseeds

Tianquan Yang (3080499)
Qian Yu (127062)
Wei Xu (28953)
De-zhu Li (5875247)
Fu Chen (418017)
Aizhong Liu (436665)

October 2018

Table S4. Differentially expressed transcriptor factors during seed development of Malania oleifera....

Additional file 6: of Molecular mechanism of the extended oil accumulation phase contributing to the high seed oil content for the genotype of tung tree (Vernicia fordii)

Lingling Zhang (116711)
Pan Wu (582692)
Wenying Lu (5875112)
Shiyou LĂź (5875115)

October 2018

Figure S4. Transcript expression of 12 DEGs related to acyl metabolism. These DEGs were remarkably d...

Additional file 6: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang (66589)
Xuehong Hao (5495630)
Ye Jin (286793)
Xiaohuan Guo (5495633)
Qing Shao (50505)
Kavitha Kumar (5495636)
Yogesh Ahlawat (5495624)
David Harry (5495627)
Chandrashekhar Joshi (5495621)
Yizhi Zheng (573108)

July 2018

Table S5. GO terms enriched with DEGs between developmental phases of Pongamia seeds. (XLS 29 kb

Additional file 5: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang (66589)
Xuehong Hao (5495630)
Ye Jin (286793)
Xiaohuan Guo (5495633)
Qing Shao (50505)
Kavitha Kumar (5495636)
Yogesh Ahlawat (5495624)
David Harry (5495627)
Chandrashekhar Joshi (5495621)
Yizhi Zheng (573108)

July 2018

Table S4. GO annotations for the DEGs between developmental phases of Pongamia seeds. (XLS 2996 kb

Additional file 4: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang (66589)
Xuehong Hao (5495630)
Ye Jin (286793)
Xiaohuan Guo (5495633)
Qing Shao (50505)
Kavitha Kumar (5495636)
Yogesh Ahlawat (5495624)
David Harry (5495627)
Chandrashekhar Joshi (5495621)
Yizhi Zheng (573108)

July 2018

Table S3. List of DEGs between developmental phases of Pongamia seeds. (XLS 2356 kb

Additional file 3: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang (66589)
Xuehong Hao (5495630)
Ye Jin (286793)
Xiaohuan Guo (5495633)
Qing Shao (50505)
Kavitha Kumar (5495636)
Yogesh Ahlawat (5495624)
David Harry (5495627)
Chandrashekhar Joshi (5495621)
Yizhi Zheng (573108)

July 2018

Table S2. List of the genes specifically expressed at each developmental phase of Pongamia seeds. (X...

Additional file 2: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang (66589)
Xuehong Hao (5495630)
Ye Jin (286793)
Xiaohuan Guo (5495633)
Qing Shao (50505)
Kavitha Kumar (5495636)
Yogesh Ahlawat (5495624)
David Harry (5495627)
Chandrashekhar Joshi (5495621)
Yizhi Zheng (573108)

July 2018

Table S1. List of the highly expressed genes (RPKM âĽ1000) at three developmental phases of Pongami...

Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang
Xuehong Hao
Ye Jin
Xiaohuan Guo
Qing Shao
Kavitha S. Kumar
Yogesh K. Ahlawat
David E. Harry
Chandrashekhar P. Joshi
Yizhi Zheng

July 2018

Abstract Background Pongamia (Millettia pinnata syn. Pongamia pinnata), an oilseed legume species, i...

Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Huang, Jianzi
Hao, Xuehong
Jin, Ye
Guo, Xiaohuan
Shao, Qing
Kumar, Kavitha
Ahlawat, Yogesh
Harry, David
Joshi, Chandrashekhar
Zheng, Yizhi

July 2018

Background Pongamia (Millettia pinnata syn. Pongamia pinnata), an oilseed legume species, is emergin...

Additional file 6: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

Ăsa Grimberg (3549173)
Anders Carlsson (607606)
Salla Marttila (2202103)
Rishikesh Bhalerao (3294)
Per Hofvander (3549170)

August 2015

Log 2 ratios and RPKM values of differentially expressed genes. Table of genes shown to be different...

Additional file 5: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

Ăsa Grimberg (3549173)
Anders Carlsson (607606)
Salla Marttila (2202103)
Rishikesh Bhalerao (3294)
Per Hofvander (3549170)

August 2015

Number of differentially expressed genes (DEGs). Up-regulated and down-regulated genes in leaves exp...

Additional file 2: of An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus

Zhibin Zhang (102722)
Jim Dunwell (6050864)
Yuan-Ming Zhang (42129)

December 2018

Figure S1. The expression patterns for the genes of 230 gene families related to oil biosynthesis. T...

Additional file 1: Table S1. of Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp

Aruna Kilaru (438417)
Xia Cao (18213)
Parker Dabbs (3585512)
Ha-Jung Sung (3585503)
Md. Rahman (3413858)
Nicholas Thrower (3585506)
Greg Zynda (3585509)
Ram Podicheti (2142478)
Enrique Ibarra-Laclette (123694)
Luis Herrera-Estrella (123696)
Keithanne Mockaitis (57727)
John Ohlrogge (118853)

August 2015

Summary of RNA-seq data with details of datasets available on the NCBI Short Read Archive. Table S2....

Additional file 7: of Molecular mechanism of the extended oil accumulation phase contributing to the high seed oil content for the genotype of tung tree (Vernicia fordii)

Lingling Zhang (116711)
Pan Wu (582692)
Wenying Lu (5875112)
Shiyou Lü (5875232)

October 2018

Figure S5. Total gene expression quantity during the early and middle period of tung oil accumulatio...

Table_1_Transcriptomic analysis of seed development in Paysonia auriculata (Brassicaceae) identifies genes involved in hydroxy fatty acid biosynthesis.xlsx

Hao Hu (111737)
Armond Swift (14422557)
Margarita Mauro-Herrera (258686)
James Borrone (14422560)
Guadalupe Borja (14422563)
Andrew N. Doust (3176982)

January 2023

Paysonia auriculata (Brassicaceae) produces multiple hydroxy fatty acids as major components of the ...

Additional file 6: of Transcriptome analysis reveals crucial genes involved in the biosynthesis of nervonic acid in woody Malania oleifera oilseeds

Tianquan Yang (3080499)
Qian Yu (127062)
Wei Xu (28953)
De-zhu Li (5875247)
Fu Chen (418017)
Aizhong Liu (436665)

October 2018

Table S4. Differentially expressed transcriptor factors during seed development of Malania oleifera....

Additional file 6: of Molecular mechanism of the extended oil accumulation phase contributing to the high seed oil content for the genotype of tung tree (Vernicia fordii)

Lingling Zhang (116711)
Pan Wu (582692)
Wenying Lu (5875112)
Shiyou LĂź (5875115)

October 2018

Figure S4. Transcript expression of 12 DEGs related to acyl metabolism. These DEGs were remarkably d...

Additional file 6: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang (66589)
Xuehong Hao (5495630)
Ye Jin (286793)
Xiaohuan Guo (5495633)
Qing Shao (50505)
Kavitha Kumar (5495636)
Yogesh Ahlawat (5495624)
David Harry (5495627)
Chandrashekhar Joshi (5495621)
Yizhi Zheng (573108)

July 2018

Table S5. GO terms enriched with DEGs between developmental phases of Pongamia seeds. (XLS 29 kb

Additional file 5: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang (66589)
Xuehong Hao (5495630)
Ye Jin (286793)
Xiaohuan Guo (5495633)
Qing Shao (50505)
Kavitha Kumar (5495636)
Yogesh Ahlawat (5495624)
David Harry (5495627)
Chandrashekhar Joshi (5495621)
Yizhi Zheng (573108)

July 2018

Table S4. GO annotations for the DEGs between developmental phases of Pongamia seeds. (XLS 2996 kb

Additional file 4: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang (66589)
Xuehong Hao (5495630)
Ye Jin (286793)
Xiaohuan Guo (5495633)
Qing Shao (50505)
Kavitha Kumar (5495636)
Yogesh Ahlawat (5495624)
David Harry (5495627)
Chandrashekhar Joshi (5495621)
Yizhi Zheng (573108)

July 2018

Table S3. List of DEGs between developmental phases of Pongamia seeds. (XLS 2356 kb

Additional file 3: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang (66589)
Xuehong Hao (5495630)
Ye Jin (286793)
Xiaohuan Guo (5495633)
Qing Shao (50505)
Kavitha Kumar (5495636)
Yogesh Ahlawat (5495624)
David Harry (5495627)
Chandrashekhar Joshi (5495621)
Yizhi Zheng (573108)

July 2018

Table S2. List of the genes specifically expressed at each developmental phase of Pongamia seeds. (X...

Additional file 2: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang (66589)
Xuehong Hao (5495630)
Ye Jin (286793)
Xiaohuan Guo (5495633)
Qing Shao (50505)
Kavitha Kumar (5495636)
Yogesh Ahlawat (5495624)
David Harry (5495627)
Chandrashekhar Joshi (5495621)
Yizhi Zheng (573108)

July 2018

Table S1. List of the highly expressed genes (RPKM âĽ1000) at three developmental phases of Pongami...

Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Jianzi Huang
Xuehong Hao
Ye Jin
Xiaohuan Guo
Qing Shao
Kavitha S. Kumar
Yogesh K. Ahlawat
David E. Harry
Chandrashekhar P. Joshi
Yizhi Zheng

July 2018

Abstract Background Pongamia (Millettia pinnata syn. Pongamia pinnata), an oilseed legume species, i...

Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Huang, Jianzi
Hao, Xuehong
Jin, Ye
Guo, Xiaohuan
Shao, Qing
Kumar, Kavitha
Ahlawat, Yogesh
Harry, David
Joshi, Chandrashekhar
Zheng, Yizhi

July 2018

Background Pongamia (Millettia pinnata syn. Pongamia pinnata), an oilseed legume species, is emergin...

Additional file 6: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

Ăsa Grimberg (3549173)
Anders Carlsson (607606)
Salla Marttila (2202103)
Rishikesh Bhalerao (3294)
Per Hofvander (3549170)

August 2015

Log 2 ratios and RPKM values of differentially expressed genes. Table of genes shown to be different...

Additional file 5: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

Ăsa Grimberg (3549173)
Anders Carlsson (607606)
Salla Marttila (2202103)
Rishikesh Bhalerao (3294)
Per Hofvander (3549170)

August 2015

Number of differentially expressed genes (DEGs). Up-regulated and down-regulated genes in leaves exp...

Additional file 2: of An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus

Zhibin Zhang (102722)
Jim Dunwell (6050864)
Yuan-Ming Zhang (42129)

December 2018

Figure S1. The expression patterns for the genes of 230 gene families related to oil biosynthesis. T...

Additional file 1: Table S1. of Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp

Aruna Kilaru (438417)
Xia Cao (18213)
Parker Dabbs (3585512)
Ha-Jung Sung (3585503)
Md. Rahman (3413858)
Nicholas Thrower (3585506)
Greg Zynda (3585509)
Ram Podicheti (2142478)
Enrique Ibarra-Laclette (123694)
Luis Herrera-Estrella (123696)
Keithanne Mockaitis (57727)
John Ohlrogge (118853)

August 2015

Summary of RNA-seq data with details of datasets available on the NCBI Short Read Archive. Table S2....

Additional file 7: of Molecular mechanism of the extended oil accumulation phase contributing to the high seed oil content for the genotype of tung tree (Vernicia fordii)

Lingling Zhang (116711)
Pan Wu (582692)
Wenying Lu (5875112)
Shiyou Lü (5875232)

October 2018

Figure S5. Total gene expression quantity during the early and middle period of tung oil accumulatio...

Table_1_Transcriptomic analysis of seed development in Paysonia auriculata (Brassicaceae) identifies genes involved in hydroxy fatty acid biosynthesis.xlsx

Hao Hu (111737)
Armond Swift (14422557)
Margarita Mauro-Herrera (258686)
James Borrone (14422560)
Guadalupe Borja (14422563)
Andrew N. Doust (3176982)

January 2023

Paysonia auriculata (Brassicaceae) produces multiple hydroxy fatty acids as major components of the ...

Additional file 6: of Transcriptome analysis reveals crucial genes involved in the biosynthesis of nervonic acid in woody Malania oleifera oilseeds

Tianquan Yang (3080499)
Qian Yu (127062)
Wei Xu (28953)
De-zhu Li (5875247)
Fu Chen (418017)
Aizhong Liu (436665)

October 2018

Table S4. Differentially expressed transcriptor factors during seed development of Malania oleifera....

Additional file 6: of Molecular mechanism of the extended oil accumulation phase contributing to the high seed oil content for the genotype of tung tree (Vernicia fordii)

Lingling Zhang (116711)
Pan Wu (582692)
Wenying Lu (5875112)
Shiyou LĂź (5875115)

October 2018

Figure S4. Transcript expression of 12 DEGs related to acyl metabolism. These DEGs were remarkably d...

Additional file 7: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Abstract

Extracted data

Additional file 7: of Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)

Abstract

Extracted data

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