Additional file 2: of Genetics of resistance to photobacteriosis in gilthead sea bream (Sparus aurata) using 2b-RAD sequencing

Information on inflation of P-value, LD among significant SNPs, genes at QTL region and Manhattan plots. This file comprises supporting information which contains Q-Q plot, zoom in view of GWAS based P-values distributed at chromosome 2, information on genes around the highest significant SNP of chromsome2, LD values with heatmap for the top 5 significant markers of GWAS analysis, and Manhattan plots showing SNP positions corrected using linkage map information, and the shrinkage of p-values using model with the addition of top significant SNP used as fixed effect. Figure S2.1. Distribution of dead and alive sibs out of total sib count per full-sib family. Figure S2.2. Manhattan plot of –log10 P-values for P_D2D trait distributed across different LGs. Figure S2.3. (A-B): Manhattan plot of –log10 P-values for P_D2D trait distributed along the length (cM) of SA17. Figure S2.4. Q Q-Plot of –log10 P-values – days to death phenotype (P_D2D). Table S2.5. Variances explained by genome-wide significantly associated SNPs of P_D2D trait. Table S2.6. Summary for the functions of important candidate genes at QTL region (DOCX 718 kb)