Figure S3. Flow-sorting fresh frozen (FF) TNBC tissue samples. DNA content analysis of diploid and aneuploid populations flow-sorted from FF TNBC tissues. DNA content and cell cycle were analyzed by using the MultiCycle software program (Phoenix Flow Systems, San Diego, CA, USA). Abbreviation: TNBC triple-negative breast cancer. (PPTX 500 kb
Comparison of internal and external TNBC cohorts’ clinicopathologic characteristics. (PDF 135 kb
External TNBC cohort’s clinicopathologic characteristics in function of the three clusters (C’1, C’2...
Table S1. Comparison of clinicopathological features of TNBC patients bearing high or low PD-L1 tumo...
Figure S2. Flow-sorting formalin-fixed paraffin-embedded (FFPE) TNBC tissue samples. DNA content ana...
Figure S1. Workflow and analyses of TNBC cohort. Fifty-five resections were screened for PD-1 and PD...
Figure S1. Comparisons of the stromal content and tumor purity between TNBC subtypes (MannâWhitney...
Figure S2. Comparisons of the expression levels of immune-related genes between TNBC subtypes. A. Co...
BRCA1 gene expression, measured by RT-PCR, for BRCA1-methylated, mutated and non-mutated/non-methyla...
Table S3. Driver gene analysis by MutSig. The two genes with q value <â10â3 (TP53 and FANCC, hig...
Table S2. Samples sequenced. Sample type, processing and sequencing. (XLSX 51Â kb
Table S3. Differential gene expression. Differentially expressed genes between 21 paired FF- and FFP...
PCA of internal TNBC cohort. Lists of PC1 and PC2 twenty highest absolute weight probes. (PDF 115 kb
Figure S4. FISH validation of high-level 9p24.1 amplicon. A) DNA content histogram of flow-sorted TN...
Projection of internal TNBC cohort in the first PCA plane. (C1, n = 55 [blue]; C2, n = 98 [red]; C3,...
Figure S3. Identification of TNBC subtype-specific pathways and gene ontology. A. KEGG pathways enri...
Comparison of internal and external TNBC cohorts’ clinicopathologic characteristics. (PDF 135 kb
External TNBC cohort’s clinicopathologic characteristics in function of the three clusters (C’1, C’2...
Table S1. Comparison of clinicopathological features of TNBC patients bearing high or low PD-L1 tumo...
Figure S2. Flow-sorting formalin-fixed paraffin-embedded (FFPE) TNBC tissue samples. DNA content ana...
Figure S1. Workflow and analyses of TNBC cohort. Fifty-five resections were screened for PD-1 and PD...
Figure S1. Comparisons of the stromal content and tumor purity between TNBC subtypes (MannâWhitney...
Figure S2. Comparisons of the expression levels of immune-related genes between TNBC subtypes. A. Co...
BRCA1 gene expression, measured by RT-PCR, for BRCA1-methylated, mutated and non-mutated/non-methyla...
Table S3. Driver gene analysis by MutSig. The two genes with q value <â10â3 (TP53 and FANCC, hig...
Table S2. Samples sequenced. Sample type, processing and sequencing. (XLSX 51Â kb
Table S3. Differential gene expression. Differentially expressed genes between 21 paired FF- and FFP...
PCA of internal TNBC cohort. Lists of PC1 and PC2 twenty highest absolute weight probes. (PDF 115 kb
Figure S4. FISH validation of high-level 9p24.1 amplicon. A) DNA content histogram of flow-sorted TN...
Projection of internal TNBC cohort in the first PCA plane. (C1, n = 55 [blue]; C2, n = 98 [red]; C3,...
Figure S3. Identification of TNBC subtype-specific pathways and gene ontology. A. KEGG pathways enri...
Comparison of internal and external TNBC cohorts’ clinicopathologic characteristics. (PDF 135 kb
External TNBC cohort’s clinicopathologic characteristics in function of the three clusters (C’1, C’2...
Table S1. Comparison of clinicopathological features of TNBC patients bearing high or low PD-L1 tumo...