Additional file 1: of Expression Profile of Defense Genes in Rice Lines Pyramided with Resistance Genes Against Bacterial Blight, Fungal Blast and Insect Gall Midge

Dhanasekar Divya (5514806)
Kanaparthi Madhavi (5514794)
Muralidharan Dass (5514809)
Roshan Maku (5514800)
Garladinne Mallikarjuna (5514791)
Raman Sundaram (5514788)
Gouri Laha (5514812)
Ayyagari Padmakumari (3560969)
Hitendra Patel (5514797)
Madamsetty Prasad (5514803)
Ramesh Sonti (269098)
Jagadish Bentur (3560966)

Publication date

July 2018

DOI

10.6084/m9.figshare.6817547.v1

Abstract

Table S1. Phenotypic evaluation of the 11 test lines against non-target pests in greenhouse and field tests. (XLSX 12Â kb

Extracted data

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Additional file 1: of Expression Profile of Defense Genes in Rice Lines Pyramided with Resistance Genes Against Bacterial Blight, Fungal Blast and Insect Gall Midge

Dhanasekar Divya (5514806)
Kanaparthi Madhavi (5514794)
Muralidharan Dass (5514809)
Roshan Maku (5514800)
Garladinne Mallikarjuna (5514791)
Raman Sundaram (5514788)
Gouri Laha (5514812)
Ayyagari Padmakumari (3560969)
Hitendra Patel (5514797)
Madamsetty Prasad (5514803)
Ramesh Sonti (269098)
Jagadish Bentur (3560966)

Open link

Publication date

July 2018

DOI

10.6084/m9.figshare.6817547.v1

Abstract

Table S1. Phenotypic evaluation of the 11 test lines against non-target pests in greenhouse and field tests. (XLSX 12Â kb

Extracted data

Changyan Li (3803485)
Chao Luo (343569)
Zaihui Zhou (3803482)
Rui Wang (52434)
Fei Ling (146901)
Langtao Xiao (102055)
Yongjun Lin (161394)
Hao Chen (5190)

February 2017

Raw data of all detected probe sets (57,194) in 36 cDNA chips ( https://www.ncbi.nlm.nih.gov/geo/ , ...

Additional file 1: Figure S1. of Metabolic and transcriptomic changes induced in host during hypersensitive response mediated resistance in rice against the Asian rice gall midge

Ruchi Agarrwal (3560963)
Ayyagari Padmakumari (3560969)
Jagadish Bentur (3560966)
Suresh Nair (117526)

February 2016

Volcano plot depicting log2-fold change (x-axis) versus âlog10 p-value (y-axis) in gene expression...

Additional file 1: Table S1. of Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

Slavica Matić (3579614)
Paolo Bagnaresi (84939)
Chiara Biselli (114669)
Luigi Orru’ (3579611)
Greice Amaral Carneiro (1525597)
Ilenia Siciliano (813823)
Giampiero Valé (3167499)
Maria Gullino (3579608)
Davide Spadaro (1525594)

August 2016

Raw and mapped reads details. Samples are referred to different Selenio (S) and Dorella (D) conditio...

Additional file 2: of Expression Profile of Defense Genes in Rice Lines Pyramided with Resistance Genes Against Bacterial Blight, Fungal Blast and Insect Gall Midge

Dhanasekar Divya (5514806)
Kanaparthi Madhavi (5514794)
Muralidharan Dass (5514809)
Roshan Maku (5514800)
Garladinne Mallikarjuna (5514791)
Raman Sundaram (5514788)
Gouri Laha (5514812)
Ayyagari Padmakumari (3560969)
Hitendra Patel (5514797)
Madamsetty Prasad (5514803)
Ramesh Sonti (269098)
Jagadish Bentur (3560966)

July 2018

Table S2. Quantitative Reverse Transcription PCR data against 14 genes recorded in Experiment-1 and ...

Additional file 3: of Expression Profile of Defense Genes in Rice Lines Pyramided with Resistance Genes Against Bacterial Blight, Fungal Blast and Insect Gall Midge

Dhanasekar Divya (5514806)
Kanaparthi Madhavi (5514794)
Muralidharan Dass (5514809)
Roshan Maku (5514800)
Garladinne Mallikarjuna (5514791)
Raman Sundaram (5514788)
Gouri Laha (5514812)
Ayyagari Padmakumari (3560969)
Hitendra Patel (5514797)
Madamsetty Prasad (5514803)
Ramesh Sonti (269098)
Jagadish Bentur (3560966)

July 2018

Table S3. Details of primer pairs used in detecting pyramided target genesÂ in test lines. (XLSX 10Â...

Additional file 3: of Comprehensive evaluation of resistance effects of pyramiding lines with different broad-spectrum resistance genes against Magnaporthe oryzae in rice (Oryza sativa L.)

Yunyu Wu (748120)
Ning Xiao (223232)
Yu Chen (29959)
Ling Yu (330944)
Cunhong Pan (748121)
Yuhong Li (448146)
Xiaoxiang Zhang (628483)
Niansheng Huang (6418001)
Hongjuan Ji (6418004)
Zhengyuan Dai (748122)
Xijun Chen (4859197)
Aihong Li (385857)

March 2019

Table S2. Information of blast populations for pathogenicity assays. (XLSX 19 kb

Additional file 1: of Comprehensive evaluation of resistance effects of pyramiding lines with different broad-spectrum resistance genes against Magnaporthe oryzae in rice (Oryza sativa L.)

Yunyu Wu (748120)
Ning Xiao (223232)
Yu Chen (29959)
Ling Yu (330944)
Cunhong Pan (748121)
Yuhong Li (448146)
Xiaoxiang Zhang (628483)
Niansheng Huang (6418001)
Hongjuan Ji (6418004)
Zhengyuan Dai (748122)
Xijun Chen (4859197)
Aihong Li (385857)

March 2019

Table S1. Information of insert fragments from donor to receptor for each of the PPLs. (XLSX 11 kb

Additional file 4: of Comprehensive evaluation of resistance effects of pyramiding lines with different broad-spectrum resistance genes against Magnaporthe oryzae in rice (Oryza sativa L.)

Yunyu Wu (748120)
Ning Xiao (223232)
Yu Chen (29959)
Ling Yu (330944)
Cunhong Pan (748121)
Yuhong Li (448146)
Xiaoxiang Zhang (628483)
Niansheng Huang (6418001)
Hongjuan Ji (6418004)
Zhengyuan Dai (748122)
Xijun Chen (4859197)
Aihong Li (385857)

March 2019

Table S3. Detail information of molecular markers tightly linked to different resistant genes. (DOCX...

Additional file 2: of Comprehensive evaluation of resistance effects of pyramiding lines with different broad-spectrum resistance genes against Magnaporthe oryzae in rice (Oryza sativa L.)

Yunyu Wu (748120)
Ning Xiao (223232)
Yu Chen (29959)
Ling Yu (330944)
Cunhong Pan (748121)
Yuhong Li (448146)
Xiaoxiang Zhang (628483)
Niansheng Huang (6418001)
Hongjuan Ji (6418004)
Zhengyuan Dai (748122)
Xijun Chen (4859197)
Aihong Li (385857)

March 2019

Figure S1. Comparing of resistant spectrum between PPLs and NILs. A Seedling blast stage; B Panicle ...

Additional file 1: of Expression Divergence as an Evolutionary Alternative Mechanism Adopted by Two Rice Subspecies Against Rice Blast Infection

Zhenhui Zhong (5205878)
Lianyu Lin (5205875)
Meilian Chen (6417794)
Lili Lin (451927)
Xiaofeng Chen (392939)
Yahong Lin (5612837)
Xi Chen (35903)
Zonghua Wang (133934)
Justice Norvienyeku (5558405)
Huakun Zheng (1525624)

March 2019

Table S1. Total number of sequencing reads and mapping results for 30 samples in this study. Table S...

Additional file 2: Table S2 of A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice

Dan Zhu (139675)
Houxiang Kang (263266)
Zhiqiang Li (102723)
Minghao Liu (3431642)
Xiaoli Zhu (767993)
Yue Wang (65477)
Dan Wang (34472)
Zhilong Wang (248924)
Wende Liu (232617)
Guo-Liang Wang (228171)

August 2016

Forty rice cultivars that were resistant in all three blast nurseries in the field. (XLSX 14 kb

Additional file 6: of Gene expression and plant hormone levels in two contrasting rice genotypes responding to brown planthopper infestation

Changyan Li (3803485)
Chao Luo (343569)
Zaihui Zhou (3803482)
Rui Wang (52434)
Fei Ling (146901)
Langtao Xiao (102055)
Yongjun Lin (161394)
Hao Chen (5190)

February 2017

The 103 potential resistance-related genes in the four BPH-resistance QTL regions in RH. (XLSX 15Â k...

Additional file 1: of Comparative analysis of the root transcriptomes of cultivated and wild rice varieties in response to Magnaporthe oryzae infection revealed both common and species-specific pathogen responses

Lei Tian (369281)
Shaohua Shi (553560)
Fahad Nasir (5126789)
Chunling Chang (4593529)
Weiqiang Li (1646440)
Lam-Son Tran (5126786)
Chunjie Tian (607531)

April 2018

Figure S1. Aerial parts of non-inoculated and inoculated cultivated and wild rice varieties. The fou...

Additional file 1: of Proteomic analysis of the defense response to Magnaporthe oryzae in rice harboring the blast resistance gene Piz-t

Dagang Tian (1986784)
Liu Yang (23752)
Zaijie Chen (3426836)
Ziqiang Chen (333890)
Feng Wang (44414)
Yuanchang Zhou (3426833)
Yuming Luo (1986781)
Liming Yang (221407)
Songbiao Chen (2584420)

August 2018

Table S1. DEPs in comparisons KJ201-NPB/Mock-NPB, RB22-NPB/Mock-NPB, KJ201-Piz-t/Mock-Piz-t, and RB2...

Additional file 1: of Gene expression and plant hormone levels in two contrasting rice genotypes responding to brown planthopper infestation

Changyan Li (3803485)
Chao Luo (343569)
Zaihui Zhou (3803482)
Rui Wang (52434)
Fei Ling (146901)
Langtao Xiao (102055)
Yongjun Lin (161394)
Hao Chen (5190)

February 2017

Raw data of all detected probe sets (57,194) in 36 cDNA chips ( https://www.ncbi.nlm.nih.gov/geo/ , ...

Additional file 1: Figure S1. of Metabolic and transcriptomic changes induced in host during hypersensitive response mediated resistance in rice against the Asian rice gall midge

Ruchi Agarrwal (3560963)
Ayyagari Padmakumari (3560969)
Jagadish Bentur (3560966)
Suresh Nair (117526)

February 2016

Volcano plot depicting log2-fold change (x-axis) versus âlog10 p-value (y-axis) in gene expression...

Additional file 1: Table S1. of Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

Slavica Matić (3579614)
Paolo Bagnaresi (84939)
Chiara Biselli (114669)
Luigi Orru’ (3579611)
Greice Amaral Carneiro (1525597)
Ilenia Siciliano (813823)
Giampiero Valé (3167499)
Maria Gullino (3579608)
Davide Spadaro (1525594)

August 2016

Raw and mapped reads details. Samples are referred to different Selenio (S) and Dorella (D) conditio...

Additional file 2: of Expression Profile of Defense Genes in Rice Lines Pyramided with Resistance Genes Against Bacterial Blight, Fungal Blast and Insect Gall Midge

Dhanasekar Divya (5514806)
Kanaparthi Madhavi (5514794)
Muralidharan Dass (5514809)
Roshan Maku (5514800)
Garladinne Mallikarjuna (5514791)
Raman Sundaram (5514788)
Gouri Laha (5514812)
Ayyagari Padmakumari (3560969)
Hitendra Patel (5514797)
Madamsetty Prasad (5514803)
Ramesh Sonti (269098)
Jagadish Bentur (3560966)

July 2018

Table S2. Quantitative Reverse Transcription PCR data against 14 genes recorded in Experiment-1 and ...

Additional file 3: of Expression Profile of Defense Genes in Rice Lines Pyramided with Resistance Genes Against Bacterial Blight, Fungal Blast and Insect Gall Midge

Dhanasekar Divya (5514806)
Kanaparthi Madhavi (5514794)
Muralidharan Dass (5514809)
Roshan Maku (5514800)
Garladinne Mallikarjuna (5514791)
Raman Sundaram (5514788)
Gouri Laha (5514812)
Ayyagari Padmakumari (3560969)
Hitendra Patel (5514797)
Madamsetty Prasad (5514803)
Ramesh Sonti (269098)
Jagadish Bentur (3560966)

July 2018

Table S3. Details of primer pairs used in detecting pyramided target genesÂ in test lines. (XLSX 10Â...

Additional file 3: of Comprehensive evaluation of resistance effects of pyramiding lines with different broad-spectrum resistance genes against Magnaporthe oryzae in rice (Oryza sativa L.)

Yunyu Wu (748120)
Ning Xiao (223232)
Yu Chen (29959)
Ling Yu (330944)
Cunhong Pan (748121)
Yuhong Li (448146)
Xiaoxiang Zhang (628483)
Niansheng Huang (6418001)
Hongjuan Ji (6418004)
Zhengyuan Dai (748122)
Xijun Chen (4859197)
Aihong Li (385857)

March 2019

Table S2. Information of blast populations for pathogenicity assays. (XLSX 19 kb

Additional file 1: of Comprehensive evaluation of resistance effects of pyramiding lines with different broad-spectrum resistance genes against Magnaporthe oryzae in rice (Oryza sativa L.)

Yunyu Wu (748120)
Ning Xiao (223232)
Yu Chen (29959)
Ling Yu (330944)
Cunhong Pan (748121)
Yuhong Li (448146)
Xiaoxiang Zhang (628483)
Niansheng Huang (6418001)
Hongjuan Ji (6418004)
Zhengyuan Dai (748122)
Xijun Chen (4859197)
Aihong Li (385857)

March 2019

Table S1. Information of insert fragments from donor to receptor for each of the PPLs. (XLSX 11 kb

Additional file 4: of Comprehensive evaluation of resistance effects of pyramiding lines with different broad-spectrum resistance genes against Magnaporthe oryzae in rice (Oryza sativa L.)

Yunyu Wu (748120)
Ning Xiao (223232)
Yu Chen (29959)
Ling Yu (330944)
Cunhong Pan (748121)
Yuhong Li (448146)
Xiaoxiang Zhang (628483)
Niansheng Huang (6418001)
Hongjuan Ji (6418004)
Zhengyuan Dai (748122)
Xijun Chen (4859197)
Aihong Li (385857)

March 2019

Table S3. Detail information of molecular markers tightly linked to different resistant genes. (DOCX...

Additional file 2: of Comprehensive evaluation of resistance effects of pyramiding lines with different broad-spectrum resistance genes against Magnaporthe oryzae in rice (Oryza sativa L.)

Yunyu Wu (748120)
Ning Xiao (223232)
Yu Chen (29959)
Ling Yu (330944)
Cunhong Pan (748121)
Yuhong Li (448146)
Xiaoxiang Zhang (628483)
Niansheng Huang (6418001)
Hongjuan Ji (6418004)
Zhengyuan Dai (748122)
Xijun Chen (4859197)
Aihong Li (385857)

March 2019

Figure S1. Comparing of resistant spectrum between PPLs and NILs. A Seedling blast stage; B Panicle ...

Additional file 1: of Expression Divergence as an Evolutionary Alternative Mechanism Adopted by Two Rice Subspecies Against Rice Blast Infection

Zhenhui Zhong (5205878)
Lianyu Lin (5205875)
Meilian Chen (6417794)
Lili Lin (451927)
Xiaofeng Chen (392939)
Yahong Lin (5612837)
Xi Chen (35903)
Zonghua Wang (133934)
Justice Norvienyeku (5558405)
Huakun Zheng (1525624)

March 2019

Table S1. Total number of sequencing reads and mapping results for 30 samples in this study. Table S...

Additional file 2: Table S2 of A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice

Dan Zhu (139675)
Houxiang Kang (263266)
Zhiqiang Li (102723)
Minghao Liu (3431642)
Xiaoli Zhu (767993)
Yue Wang (65477)
Dan Wang (34472)
Zhilong Wang (248924)
Wende Liu (232617)
Guo-Liang Wang (228171)

August 2016

Forty rice cultivars that were resistant in all three blast nurseries in the field. (XLSX 14 kb

Additional file 6: of Gene expression and plant hormone levels in two contrasting rice genotypes responding to brown planthopper infestation

Changyan Li (3803485)
Chao Luo (343569)
Zaihui Zhou (3803482)
Rui Wang (52434)
Fei Ling (146901)
Langtao Xiao (102055)
Yongjun Lin (161394)
Hao Chen (5190)

February 2017

The 103 potential resistance-related genes in the four BPH-resistance QTL regions in RH. (XLSX 15Â k...

Lei Tian (369281)
Shaohua Shi (553560)
Fahad Nasir (5126789)
Chunling Chang (4593529)
Weiqiang Li (1646440)
Lam-Son Tran (5126786)
Chunjie Tian (607531)

April 2018

Figure S1. Aerial parts of non-inoculated and inoculated cultivated and wild rice varieties. The fou...

Additional file 1: of Proteomic analysis of the defense response to Magnaporthe oryzae in rice harboring the blast resistance gene Piz-t

Dagang Tian (1986784)
Liu Yang (23752)
Zaijie Chen (3426836)
Ziqiang Chen (333890)
Feng Wang (44414)
Yuanchang Zhou (3426833)
Yuming Luo (1986781)
Liming Yang (221407)
Songbiao Chen (2584420)

August 2018

Table S1. DEPs in comparisons KJ201-NPB/Mock-NPB, RB22-NPB/Mock-NPB, KJ201-Piz-t/Mock-Piz-t, and RB2...

Additional file 1: of Gene expression and plant hormone levels in two contrasting rice genotypes responding to brown planthopper infestation

Changyan Li (3803485)
Chao Luo (343569)
Zaihui Zhou (3803482)
Rui Wang (52434)
Fei Ling (146901)
Langtao Xiao (102055)
Yongjun Lin (161394)
Hao Chen (5190)

February 2017

Raw data of all detected probe sets (57,194) in 36 cDNA chips ( https://www.ncbi.nlm.nih.gov/geo/ , ...

Additional file 1: Figure S1. of Metabolic and transcriptomic changes induced in host during hypersensitive response mediated resistance in rice against the Asian rice gall midge

Ruchi Agarrwal (3560963)
Ayyagari Padmakumari (3560969)
Jagadish Bentur (3560966)
Suresh Nair (117526)

February 2016

Volcano plot depicting log2-fold change (x-axis) versus âlog10 p-value (y-axis) in gene expression...

Additional file 1: Table S1. of Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

Slavica Matić (3579614)
Paolo Bagnaresi (84939)
Chiara Biselli (114669)
Luigi Orru’ (3579611)
Greice Amaral Carneiro (1525597)
Ilenia Siciliano (813823)
Giampiero Valé (3167499)
Maria Gullino (3579608)
Davide Spadaro (1525594)

August 2016

Raw and mapped reads details. Samples are referred to different Selenio (S) and Dorella (D) conditio...

Additional file 1: of Expression Profile of Defense Genes in Rice Lines Pyramided with Resistance Genes Against Bacterial Blight, Fungal Blast and Insect Gall Midge

Abstract

Extracted data

Additional file 1: of Expression Profile of Defense Genes in Rice Lines Pyramided with Resistance Genes Against Bacterial Blight, Fungal Blast and Insect Gall Midge

Abstract

Extracted data

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