MOESM2 of Enrichment of syngas-converting mixed microbial consortia for ethanol production and thermodynamics-based design of enrichment strategies

MOESM1 of Bioreactor microbial ecosystems with differentiated methanogenic phenol biodegradation and competitive metabolic pathways unraveled with genome-resolved metagenomics

Feng Ju (103821)
Yubo Wang (556762)
Tong Zhang (103827)

May 2018

Additional file 1: Text S1. Comparison of Syntrophorhabdus genomes. Figure S1. The bioinformatics an...

MOESM4 of Methane-yielding microbial communities processing lactate-rich substrates: a piece of the anaerobic digestion puzzle

Anna Detman (743844)
Damian Mielecki (186634)
Łukasz Pleśniak (5127473)
Michał Bucha (5127470)
Marek Janiga (5127467)
Irena Matyasik (5127476)
Aleksandra Chojnacka (186642)
Mariusz-Orion Jędrysek (5127464)
Mieczysław Błaszczyk (5127479)
Anna Sikora (465861)

April 2018

Additional file 4. Number of reads assigned to respective taxonomic branches, M1 B microbial communi...

MOESM1 of Trace element and temperature effects on microbial communities and links to biogas digester performance at high ammonia levels

Maria Westerholm (3421646)
Bettina MĂźller (3413231)
Simon Isaksson (3421649)
Anna SchnĂźrer (3413237)

September 2015

Additional file 1: Table S1. Total metal concentrations in digester samples. Table S2. Accession num...

MOESM1 of Enrichment of syngas-converting mixed microbial consortia for ethanol production and thermodynamics-based design of enrichment strategies

Antonio Grimalt-Alemany (5538542)
Mateusz Łężyk (5538539)
Lene Lange (668394)
Ioannis Skiadas (5538548)
Hariklia Gavala (5538545)

July 2018

Additional file 1: Table S1. t-test for comparing the biomass yields of the enrichment experiments. ...

MOESM1 of Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants

Yvonne Stolze (3490184)
Andreas Bremges (492421)
Madis Rumming (539007)
Christian Henke (361552)
Irena Maus (3490166)
Alfred PĂźhler (3538337)
Alexander Sczyrba (16021)
Andreas SchlĂźter (3447287)

July 2016

Additional file 1: BIOM-File S1. Final operational taxonomic unit (OTU) table in BIOM format, format...

MOESM1 of Bacterial community composition and fhs profiles of low- and high-ammonia biogas digesters reveal novel syntrophic acetate-oxidising bacteria

Bettina MĂźller (3413231)
Li Sun (4624)
Maria Westerholm (3421646)
Anna SchnĂźrer (3413237)

February 2016

Additional file 1: Figure S1. Rank abundance of formyltetrahydrofolate synthetase (fhs) operational ...

MOESM1 of Lessons learned from the microbial ecology resulting from different inoculation strategies for biogas production from waste products of the bioethanol/sugar industry

Athaydes Leite (3575552)
Leandro Janke (3575555)
Hauke Harms (1606666)
Hans-Hermann Richnow (1645897)
Marcell Nikolausz (3575549)

July 2016

Additional file 1: Figure S1. Duplicate T-RFLP profiles of the methanogenic community dynamics for e...

MOESM2 of Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants

Yvonne Stolze (3490184)
Andreas Bremges (492421)
Madis Rumming (539007)
Christian Henke (361552)
Irena Maus (3490166)
Alfred PĂźhler (3538337)
Alexander Sczyrba (16021)
Andreas SchlĂźter (3447287)

July 2016

Additional file 2: Figure S1. Phylogenetic tree of all available type strains with operational taxon...

MOESM1 of Comparative analysis of deep sequenced methanogenic communities: identification of microorganisms responsible for methane production

Adam Pyzik (6109514)
Martyna Ciezkowska (6109517)
Pawel Krawczyk (6109520)
Adam Sobczak (5640008)
Lukasz Drewniak (6109523)
Andrzej Dziembowski (346520)
Leszek Lipinski (16997)

December 2018

Additional file 1: Table S1. Physico-chemical characteristics of the studied samples. TS—total solid...

MOESM2 of Genome-centric metatranscriptomes and ecological roles of the active microbial populations during cellulosic biomass anaerobic digestion

Yangyang Jia (3725347)
Siu-Kin Ng (28727)
Hongyuan Lu (3725344)
Mingwei Cai (3725350)
Patrick Lee (2088535)

April 2018

Additional file 2. Summary statistics of de novo co-assembly and binning of metagenomes of the five ...

MOESM2 of The core populations and co-occurrence patterns of prokaryotic communities in household biogas digesters

Junpeng Rui (657155)
Jiabao Li (152741)
Shiheng Zhang (3555263)
Xuefeng Yan (1322220)
Yuanpeng Wang (122052)
Xiangzhen Li (204357)

September 2015

Additional file 2: Table S1. Prokaryotic diversity indices based on 97 % identity of 16S rRNA gene s...

MOESM1 of Effects of H2:CO2 ratio and H2 supply fluctuation on methane content and microbial community composition during in-situ biological biogas upgrading

Radziah Wahid (6652256)
Daniel Mulat (4927195)
John Gaby (4685476)
Svein Horn (3533633)

April 2019

Additional file 1: Figure S1. Stacked barplot of the relative abundance of ASVs detected in each sam...

Enrichment of syngas-converting mixed microbial consortia for ethanol production and thermodynamics-based design of enrichment strategies

Antonio Grimalt-Alemany
Mateusz Łężyk
Lene Lange
Ioannis V. Skiadas
Hariklia N. Gavala

July 2018

Abstract Background The production of ethanol through the biochemical conversion of syngas, a mixtur...

MOESM2 of Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process

Sabine Koch (3151803)
Dirk Benndorf (1496455)
Karen Fronk (3505241)
Udo Reichl (87993)
Steffen Klamt (25228)

January 2016

Additional file 2. Documentation for all stoichiometric models used in this study

MOESM7 of Systems analysis of ethanol production in the genetically engineered cyanobacterium Synechococcus sp. PCC 7002

Joachim Kopka (4071)
Stefanie Schmidt (3567638)
Frederik Dethloff (3560441)
Nadin Pade (3560435)
Susanne Berendt (3816490)
Marco Schottkowski (281297)
Nico Martin (3816493)
Ulf DĂźhring (3560426)
Ekaterina Kuchmina (3816496)
Heike Enke (1426360)
Dan Kramer (3560432)
Annegret Wilde (25294)
Martin Hagemann (227074)
Alexandra Friedrich (1348851)

March 2017

Additional file 7. Aromatic amino acids and shikimate. Metabolite data represent internal standard-c...

MOESM1 of Bioreactor microbial ecosystems with differentiated methanogenic phenol biodegradation and competitive metabolic pathways unraveled with genome-resolved metagenomics

Feng Ju (103821)
Yubo Wang (556762)
Tong Zhang (103827)

May 2018

Additional file 1: Text S1. Comparison of Syntrophorhabdus genomes. Figure S1. The bioinformatics an...

MOESM4 of Methane-yielding microbial communities processing lactate-rich substrates: a piece of the anaerobic digestion puzzle

Anna Detman (743844)
Damian Mielecki (186634)
Łukasz Pleśniak (5127473)
Michał Bucha (5127470)
Marek Janiga (5127467)
Irena Matyasik (5127476)
Aleksandra Chojnacka (186642)
Mariusz-Orion Jędrysek (5127464)
Mieczysław Błaszczyk (5127479)
Anna Sikora (465861)

April 2018

Additional file 4. Number of reads assigned to respective taxonomic branches, M1 B microbial communi...

MOESM1 of Trace element and temperature effects on microbial communities and links to biogas digester performance at high ammonia levels

Maria Westerholm (3421646)
Bettina MĂźller (3413231)
Simon Isaksson (3421649)
Anna SchnĂźrer (3413237)

September 2015

Additional file 1: Table S1. Total metal concentrations in digester samples. Table S2. Accession num...

MOESM1 of Enrichment of syngas-converting mixed microbial consortia for ethanol production and thermodynamics-based design of enrichment strategies

Antonio Grimalt-Alemany (5538542)
Mateusz Łężyk (5538539)
Lene Lange (668394)
Ioannis Skiadas (5538548)
Hariklia Gavala (5538545)

July 2018

Additional file 1: Table S1. t-test for comparing the biomass yields of the enrichment experiments. ...

MOESM1 of Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants

Yvonne Stolze (3490184)
Andreas Bremges (492421)
Madis Rumming (539007)
Christian Henke (361552)
Irena Maus (3490166)
Alfred PĂźhler (3538337)
Alexander Sczyrba (16021)
Andreas SchlĂźter (3447287)

July 2016

Additional file 1: BIOM-File S1. Final operational taxonomic unit (OTU) table in BIOM format, format...

MOESM1 of Bacterial community composition and fhs profiles of low- and high-ammonia biogas digesters reveal novel syntrophic acetate-oxidising bacteria

Bettina MĂźller (3413231)
Li Sun (4624)
Maria Westerholm (3421646)
Anna SchnĂźrer (3413237)

February 2016

Additional file 1: Figure S1. Rank abundance of formyltetrahydrofolate synthetase (fhs) operational ...

MOESM1 of Lessons learned from the microbial ecology resulting from different inoculation strategies for biogas production from waste products of the bioethanol/sugar industry

Athaydes Leite (3575552)
Leandro Janke (3575555)
Hauke Harms (1606666)
Hans-Hermann Richnow (1645897)
Marcell Nikolausz (3575549)

July 2016

Additional file 1: Figure S1. Duplicate T-RFLP profiles of the methanogenic community dynamics for e...

MOESM2 of Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants

Yvonne Stolze (3490184)
Andreas Bremges (492421)
Madis Rumming (539007)
Christian Henke (361552)
Irena Maus (3490166)
Alfred PĂźhler (3538337)
Alexander Sczyrba (16021)
Andreas SchlĂźter (3447287)

July 2016

Additional file 2: Figure S1. Phylogenetic tree of all available type strains with operational taxon...

MOESM1 of Comparative analysis of deep sequenced methanogenic communities: identification of microorganisms responsible for methane production

Adam Pyzik (6109514)
Martyna Ciezkowska (6109517)
Pawel Krawczyk (6109520)
Adam Sobczak (5640008)
Lukasz Drewniak (6109523)
Andrzej Dziembowski (346520)
Leszek Lipinski (16997)

December 2018

Additional file 1: Table S1. Physico-chemical characteristics of the studied samples. TS—total solid...

MOESM2 of Genome-centric metatranscriptomes and ecological roles of the active microbial populations during cellulosic biomass anaerobic digestion

Yangyang Jia (3725347)
Siu-Kin Ng (28727)
Hongyuan Lu (3725344)
Mingwei Cai (3725350)
Patrick Lee (2088535)

April 2018

Additional file 2. Summary statistics of de novo co-assembly and binning of metagenomes of the five ...

MOESM2 of The core populations and co-occurrence patterns of prokaryotic communities in household biogas digesters

Junpeng Rui (657155)
Jiabao Li (152741)
Shiheng Zhang (3555263)
Xuefeng Yan (1322220)
Yuanpeng Wang (122052)
Xiangzhen Li (204357)

September 2015

Additional file 2: Table S1. Prokaryotic diversity indices based on 97 % identity of 16S rRNA gene s...

MOESM1 of Effects of H2:CO2 ratio and H2 supply fluctuation on methane content and microbial community composition during in-situ biological biogas upgrading

Radziah Wahid (6652256)
Daniel Mulat (4927195)
John Gaby (4685476)
Svein Horn (3533633)

April 2019

Additional file 1: Figure S1. Stacked barplot of the relative abundance of ASVs detected in each sam...

Enrichment of syngas-converting mixed microbial consortia for ethanol production and thermodynamics-based design of enrichment strategies

Antonio Grimalt-Alemany
Mateusz Łężyk
Lene Lange
Ioannis V. Skiadas
Hariklia N. Gavala

July 2018

Abstract Background The production of ethanol through the biochemical conversion of syngas, a mixtur...

MOESM2 of Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process

Sabine Koch (3151803)
Dirk Benndorf (1496455)
Karen Fronk (3505241)
Udo Reichl (87993)
Steffen Klamt (25228)

January 2016

Additional file 2. Documentation for all stoichiometric models used in this study

MOESM7 of Systems analysis of ethanol production in the genetically engineered cyanobacterium Synechococcus sp. PCC 7002

Joachim Kopka (4071)
Stefanie Schmidt (3567638)
Frederik Dethloff (3560441)
Nadin Pade (3560435)
Susanne Berendt (3816490)
Marco Schottkowski (281297)
Nico Martin (3816493)
Ulf DĂźhring (3560426)
Ekaterina Kuchmina (3816496)
Heike Enke (1426360)
Dan Kramer (3560432)
Annegret Wilde (25294)
Martin Hagemann (227074)
Alexandra Friedrich (1348851)

March 2017

Additional file 7. Aromatic amino acids and shikimate. Metabolite data represent internal standard-c...

MOESM1 of Bioreactor microbial ecosystems with differentiated methanogenic phenol biodegradation and competitive metabolic pathways unraveled with genome-resolved metagenomics

Feng Ju (103821)
Yubo Wang (556762)
Tong Zhang (103827)

May 2018

Additional file 1: Text S1. Comparison of Syntrophorhabdus genomes. Figure S1. The bioinformatics an...

MOESM4 of Methane-yielding microbial communities processing lactate-rich substrates: a piece of the anaerobic digestion puzzle

Anna Detman (743844)
Damian Mielecki (186634)
Łukasz Pleśniak (5127473)
Michał Bucha (5127470)
Marek Janiga (5127467)
Irena Matyasik (5127476)
Aleksandra Chojnacka (186642)
Mariusz-Orion Jędrysek (5127464)
Mieczysław Błaszczyk (5127479)
Anna Sikora (465861)

April 2018

Additional file 4. Number of reads assigned to respective taxonomic branches, M1 B microbial communi...

MOESM1 of Trace element and temperature effects on microbial communities and links to biogas digester performance at high ammonia levels

Maria Westerholm (3421646)
Bettina MĂźller (3413231)
Simon Isaksson (3421649)
Anna SchnĂźrer (3413237)

September 2015

Additional file 1: Table S1. Total metal concentrations in digester samples. Table S2. Accession num...

MOESM2 of Enrichment of syngas-converting mixed microbial consortia for ethanol production and thermodynamics-based design of enrichment strategies

Abstract

Extracted data

MOESM2 of Enrichment of syngas-converting mixed microbial consortia for ethanol production and thermodynamics-based design of enrichment strategies

Abstract

Extracted data

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