<p>(A) Relative site frequency spectrum (rSFS) that is defined as the ratio of observed-to-expected proportion of SFS in the 54-kb region. The rSFS is calculated from <i>D</i><sub>1000</sub> and the expectation under the standard neutral model of constant size. (B) Barcode representation of SNPs in the 54-kb region of EAS. The red dotted line shows the location of the three promoter SNPs. A red bar and a gray bar at an individual SNP site indicate the number of derived alleles that are linked to the CGC-type and the nonCGC-type, respectively. The unshaded area corresponds to the 18-kb core LD region. (C) Simulated distributions of <i>F</i><sub> under the standard model of constant size (1,237 replications in gray) and the demographic model ...
<p>The grey bars represent the SNPs present only in GBS. The striped bars represent the SNPs sequenc...
<p>(A) Polymorphism in <i>NRPB1</i>. Top graph shows unfolded SFS (top graph) relative to <i>A. lyra...
<p>Each figure was composed of chromosome scale (the top line with even division), the transcription...
<p>The folded SFS for non-synonymous SNPs: observed values are shown in black, and expected values u...
(A-D) Distributions of A/T frequencies fA/T of transition SNPs for synonymous (blue), non-synonymous...
<p>Numbers of single nucleotide polymorphisms (SNPs, Y axis) in frequency classes 1–23 (X axis). The...
<p>Only SNPs found in the modal number of samples per groups were used. In each figure, x and y axis...
Site requency spectra (SFS) estimated using ANGSD from RAD-seq data mapped to the reference genome. ...
MotivationThe distribution of allele frequencies across polymorphic sites, also known as the site fr...
[18 files] Site frequency spectra for autosomal scaffolds considering different site classes: 4D sit...
International audienceWe introduce the conditional Site Frequency Spectrum (SFS) for a genomic regio...
<p>The first eight panels represent the distribution of the frequency of reference bases in sequenci...
<p>The figure shows the frequency spectra of nonsynonymous (red) and synonymous (black) mutations am...
Left panel represents the SFS of n = 25 below-median coverage genomes and right panel shows the SFS ...
<p>(<b>A</b>) SFS for all genomic SNPs (Genome), synonymous (S) or non-synonymous (NS) SNPs in Borne...
<p>The grey bars represent the SNPs present only in GBS. The striped bars represent the SNPs sequenc...
<p>(A) Polymorphism in <i>NRPB1</i>. Top graph shows unfolded SFS (top graph) relative to <i>A. lyra...
<p>Each figure was composed of chromosome scale (the top line with even division), the transcription...
<p>The folded SFS for non-synonymous SNPs: observed values are shown in black, and expected values u...
(A-D) Distributions of A/T frequencies fA/T of transition SNPs for synonymous (blue), non-synonymous...
<p>Numbers of single nucleotide polymorphisms (SNPs, Y axis) in frequency classes 1–23 (X axis). The...
<p>Only SNPs found in the modal number of samples per groups were used. In each figure, x and y axis...
Site requency spectra (SFS) estimated using ANGSD from RAD-seq data mapped to the reference genome. ...
MotivationThe distribution of allele frequencies across polymorphic sites, also known as the site fr...
[18 files] Site frequency spectra for autosomal scaffolds considering different site classes: 4D sit...
International audienceWe introduce the conditional Site Frequency Spectrum (SFS) for a genomic regio...
<p>The first eight panels represent the distribution of the frequency of reference bases in sequenci...
<p>The figure shows the frequency spectra of nonsynonymous (red) and synonymous (black) mutations am...
Left panel represents the SFS of n = 25 below-median coverage genomes and right panel shows the SFS ...
<p>(<b>A</b>) SFS for all genomic SNPs (Genome), synonymous (S) or non-synonymous (NS) SNPs in Borne...
<p>The grey bars represent the SNPs present only in GBS. The striped bars represent the SNPs sequenc...
<p>(A) Polymorphism in <i>NRPB1</i>. Top graph shows unfolded SFS (top graph) relative to <i>A. lyra...
<p>Each figure was composed of chromosome scale (the top line with even division), the transcription...