Additional file 2: of Serum levels of B-cell activating factor of the TNF family (BAFF) correlate with anti-Jo-1 autoantibodies levels and disease activity in patients with anti-Jo-1positive polymyositis and dermatomyositis

Olga Kryštůfková (5567456)
Hana Hulejová (605297)
Heřman Mann (605296)
Ondřej Pecha (605299)
Ivana Půtová (5567459)
Louise Ekholm (5567462)
Ingrid Lundberg (3497318)
Jiří Vencovský (3366512)

Publication date

July 2018

DOI

10.6084/m9.figshare.6874361.v1

Abstract

The application method of the hierarchical linear model (HLM). Detailed explanation of HLM principles, its use for the unbalanced designs, and interpretation of results. (PDF 199 kb

Extracted data

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Data Protection

Additional file 2: of Serum levels of B-cell activating factor of the TNF family (BAFF) correlate with anti-Jo-1 autoantibodies levels and disease activity in patients with anti-Jo-1positive polymyositis and dermatomyositis

Olga Kryštůfková (5567456)
Hana Hulejová (605297)
Heřman Mann (605296)
Ondřej Pecha (605299)
Ivana Půtová (5567459)
Louise Ekholm (5567462)
Ingrid Lundberg (3497318)
Jiří Vencovský (3366512)

Open link

Publication date

July 2018

DOI

10.6084/m9.figshare.6874361.v1

Abstract

The application method of the hierarchical linear model (HLM). Detailed explanation of HLM principles, its use for the unbalanced designs, and interpretation of results. (PDF 199 kb

Extracted data

Fulvio Santacatterina (3739348)
María Sánchez-Aragó (720459)
Marc Catalán-García (3739339)
Glòria Garrabou (3739351)
Cristina Arenas (3739354)
Josep Grau (3739342)
Francesc Cardellach (273503)
José Cuezva (3739345)

February 2017

Additional file 4: Figure S3. Plasma levels of PKM2 by ELISA and RPPA. a Determination of PKM2 by EL...

Additional file 8: of Dysregulation of RasGRP1 in rheumatoid arthritis and modulation of RasGRP3 as a biomarker of TNFα inhibitors

Marie-Laure Golinski (786439)
Thibault Vandhuick (3441770)
Céline Derambure (786435)
Manuel Fréret (786436)
Matthieu Lecuyer (3441773)
Clément Guillou (786434)
Martine Hiron (3441767)
Olivier Boyer (211211)
Xavier Le Loët (408285)
Olivier Vittecoq (408284)
Thierry Lequerré (786441)

December 2015

A model of RasGRP1 regulation by TNFα. In T cells, TNFα binding to TNF receptor-1 (TNFR1) leads to a...

Additional file 4: of Dysregulation of RasGRP1 in rheumatoid arthritis and modulation of RasGRP3 as a biomarker of TNFα inhibitors

Marie-Laure Golinski (786439)
Thibault Vandhuick (3441770)
Céline Derambure (786435)
Manuel Fréret (786436)
Matthieu Lecuyer (3441773)
Clément Guillou (786434)
Martine Hiron (3441767)
Olivier Boyer (211211)
Xavier Le Loët (408285)
Olivier Vittecoq (408284)
Thierry Lequerré (786441)

December 2015

T and B cell purity. After negative selection of peripheral blood mononuclear cells from healthy con...

Additional file 1: of Serum levels of B-cell activating factor of the TNF family (BAFF) correlate with anti-Jo-1 autoantibodies levels and disease activity in patients with anti-Jo-1positive polymyositis and dermatomyositis

Olga Kryštůfková (5567456)
Hana Hulejová (605297)
Heřman Mann (605296)
Ondřej Pecha (605299)
Ivana Půtová (5567459)
Louise Ekholm (5567462)
Ingrid Lundberg (3497318)
Jiří Vencovský (3366512)

July 2018

Design of data collection. Graphical representation of the time flow of individual patient visits. T...

Additional file 3: of Serum levels of B-cell activating factor of the TNF family (BAFF) correlate with anti-Jo-1 autoantibodies levels and disease activity in patients with anti-Jo-1positive polymyositis and dermatomyositis

Olga Kryštůfková (5567456)
Hana Hulejová (605297)
Heřman Mann (605296)
Ondřej Pecha (605299)
Ivana Půtová (5567459)
Louise Ekholm (5567462)
Ingrid Lundberg (3497318)
Jiří Vencovský (3366512)

July 2018

The scatter plots of source cross-sectional data for correlational analysis presented in Table 2. Th...

Additional file 5: of Serum levels of B-cell activating factor of the TNF family (BAFF) correlate with anti-Jo-1 autoantibodies levels and disease activity in patients with anti-Jo-1positive polymyositis and dermatomyositis

Olga Kryštůfková (5567456)
Hana Hulejová (605297)
Heřman Mann (605296)
Ondřej Pecha (605299)
Ivana Půtová (5567459)
Louise Ekholm (5567462)
Ingrid Lundberg (3497318)
Jiří Vencovský (3366512)

July 2018

The scatter plots of source data for correlational analysis presented in Table 3. Changes between fi...

Additional file 2: of Genetic background may contribute to the latitude-dependent prevalence of dermatomyositis and anti-TIF1-γ autoantibodies in adult patients with myositis

Joanna Parkes (3454196)
Simon Rothwell (283321)
Alexander Oldroyd (5354216)
Hector Chinoy (283330)
Janine Lamb (3454202)

June 2018

Figure S1. The association of relative dermatomyositis (DM) prevalence, frequency of DM-associated a...

Additional file 1: of Differential roles of hypoxia and innate immunity in juvenile and adult dermatomyositis

Corinna Preuße (3404795)
Yves Allenbach (483114)
Olaf Hoffmann (3404801)
Hans-Hilmar Goebel (3404804)
Debora Pehl (702441)
Josefine Radke (281457)
Alexandra Doeser (3404798)
Udo Schneider (114502)
Rieke Alten (52012)
Tilmann Kallinich (3404807)
Olivier Benveniste (483116)
Arpad von Moers (239369)
Benedikt Schoser (198716)
Ulrike Schara (418917)
Werner Stenzel (25625)

April 2016

Figure S1A. VAS and score of ISG15, HIF1α and VEGF in DM patients. “Severity” of tissue affection in...

Serum levels of B-cell activating factor of the TNF family (BAFF) correlate with anti-Jo-1 autoantibodies levels and disease activity in patients with anti-Jo-1positive polymyositis and dermatomyositis

Olga Kryštůfková
Hana Hulejová
Heřman F. Mann
Ondřej Pecha
Ivana Půtová
Louise Ekholm
Ingrid E. Lundberg
Jiří Vencovský

July 2018

Abstract Background B-cell activating factor of the tumour necrosis factor family (BAFF) plays a rol...

Additional file 1: of Genetic background may contribute to the latitude-dependent prevalence of dermatomyositis and anti-TIF1-Îł autoantibodies in adult patients with myositis

Joanna Parkes (3454196)
Simon Rothwell (283321)
Alexander Oldroyd (5354216)
Hector Chinoy (283330)
Janine Lamb (3454202)

June 2018

Table S1. Immunochip study data included in analyses. Assigned latitude and numbers of PM, DM and co...

Additional file 2: of High titers of both rheumatoid factor and anti-CCP antibodies at baseline in patients with rheumatoid arthritis are associated with increased circulating baseline TNF level, low drug levels, and reduced clinical responses: a post hoc analysis of the RISING study

Tsutomu Takeuchi (163145)
Nobuyuki Miyasaka (12600)
Takashi Inui (821466)
Toshiro Yano (4411327)
Toru Yoshinari (2584039)
Tohru Abe (4411324)
Takao Koike (186334)

September 2017

Stratification of patients based on RF and anti-CCP titers at week 0. (PDF 419 kb

Additional file 1: of T-cell transcriptomics from peripheral blood highlights differences between polymyositis and dermatomyositis patients

Miranda Houtman (5700545)
Louise Ekholm (5567462)
Espen Hesselberg (5700548)
Karine Chemin (221751)
Vivianne Malmström (4151)
Ann Reed (5700551)
Ingrid Lundberg (3497318)
Leonid Padyukov (39206)

August 2018

Additional clinical characteristics of patients included in this study. Tables S1–S3 provide additio...

Additional file 2: of T-cell transcriptomics from peripheral blood highlights differences between polymyositis and dermatomyositis patients

Miranda Houtman (5700545)
Louise Ekholm (5567462)
Espen Hesselberg (5700548)
Karine Chemin (221751)
Vivianne Malmström (4151)
Ann Reed (5700551)
Ingrid Lundberg (3497318)
Leonid Padyukov (39206)

August 2018

Differentially expressed genes for CD4+ T cells of PM and DM patients. Table S6 and S7 provide diffe...

Additional file 6: of T-cell transcriptomics from peripheral blood highlights differences between polymyositis and dermatomyositis patients

Miranda Houtman (5700545)
Louise Ekholm (5567462)
Espen Hesselberg (5700548)
Karine Chemin (221751)
Vivianne Malmström (4151)
Ann Reed (5700551)
Ingrid Lundberg (3497318)
Leonid Padyukov (39206)

August 2018

Differentially expressed genes in CD4+ T cells of HLA-DRB1*03-positive and -negative myositis patien...

MOESM4 of Pyruvate kinase M2 and the mitochondrial ATPase Inhibitory Factor 1 provide novel biomarkers of dermatomyositis: a metabolic link to oncogenesis

Fulvio Santacatterina (3739348)
María Sánchez-Aragó (720459)
Marc Catalán-García (3739339)
Glòria Garrabou (3739351)
Cristina Arenas (3739354)
Josep Grau (3739342)
Francesc Cardellach (273503)
José Cuezva (3739345)

February 2017

Additional file 4: Figure S3. Plasma levels of PKM2 by ELISA and RPPA. a Determination of PKM2 by EL...

Additional file 8: of Dysregulation of RasGRP1 in rheumatoid arthritis and modulation of RasGRP3 as a biomarker of TNFα inhibitors

Marie-Laure Golinski (786439)
Thibault Vandhuick (3441770)
Céline Derambure (786435)
Manuel Fréret (786436)
Matthieu Lecuyer (3441773)
Clément Guillou (786434)
Martine Hiron (3441767)
Olivier Boyer (211211)
Xavier Le Loët (408285)
Olivier Vittecoq (408284)
Thierry Lequerré (786441)

December 2015

A model of RasGRP1 regulation by TNFα. In T cells, TNFα binding to TNF receptor-1 (TNFR1) leads to a...

Additional file 4: of Dysregulation of RasGRP1 in rheumatoid arthritis and modulation of RasGRP3 as a biomarker of TNFα inhibitors

Marie-Laure Golinski (786439)
Thibault Vandhuick (3441770)
Céline Derambure (786435)
Manuel Fréret (786436)
Matthieu Lecuyer (3441773)
Clément Guillou (786434)
Martine Hiron (3441767)
Olivier Boyer (211211)
Xavier Le Loët (408285)
Olivier Vittecoq (408284)
Thierry Lequerré (786441)

December 2015

T and B cell purity. After negative selection of peripheral blood mononuclear cells from healthy con...

Olga Kryštůfková (5567456)
Hana Hulejová (605297)
Heřman Mann (605296)
Ondřej Pecha (605299)
Ivana Půtová (5567459)
Louise Ekholm (5567462)
Ingrid Lundberg (3497318)
Jiří Vencovský (3366512)

July 2018

Design of data collection. Graphical representation of the time flow of individual patient visits. T...

Olga Kryštůfková (5567456)
Hana Hulejová (605297)
Heřman Mann (605296)
Ondřej Pecha (605299)
Ivana Půtová (5567459)
Louise Ekholm (5567462)
Ingrid Lundberg (3497318)
Jiří Vencovský (3366512)

July 2018

The scatter plots of source cross-sectional data for correlational analysis presented in Table 2. Th...

Olga Kryštůfková (5567456)
Hana Hulejová (605297)
Heřman Mann (605296)
Ondřej Pecha (605299)
Ivana Půtová (5567459)
Louise Ekholm (5567462)
Ingrid Lundberg (3497318)
Jiří Vencovský (3366512)

July 2018

The scatter plots of source data for correlational analysis presented in Table 3. Changes between fi...

Additional file 2: of Genetic background may contribute to the latitude-dependent prevalence of dermatomyositis and anti-TIF1-γ autoantibodies in adult patients with myositis

Joanna Parkes (3454196)
Simon Rothwell (283321)
Alexander Oldroyd (5354216)
Hector Chinoy (283330)
Janine Lamb (3454202)

June 2018

Figure S1. The association of relative dermatomyositis (DM) prevalence, frequency of DM-associated a...

Additional file 1: of Differential roles of hypoxia and innate immunity in juvenile and adult dermatomyositis

Corinna Preuße (3404795)
Yves Allenbach (483114)
Olaf Hoffmann (3404801)
Hans-Hilmar Goebel (3404804)
Debora Pehl (702441)
Josefine Radke (281457)
Alexandra Doeser (3404798)
Udo Schneider (114502)
Rieke Alten (52012)
Tilmann Kallinich (3404807)
Olivier Benveniste (483116)
Arpad von Moers (239369)
Benedikt Schoser (198716)
Ulrike Schara (418917)
Werner Stenzel (25625)

April 2016

Figure S1A. VAS and score of ISG15, HIF1α and VEGF in DM patients. “Severity” of tissue affection in...

Olga Kryštůfková
Hana Hulejová
Heřman F. Mann
Ondřej Pecha
Ivana Půtová
Louise Ekholm
Ingrid E. Lundberg
Jiří Vencovský

July 2018

Abstract Background B-cell activating factor of the tumour necrosis factor family (BAFF) plays a rol...

Additional file 1: of Genetic background may contribute to the latitude-dependent prevalence of dermatomyositis and anti-TIF1-Îł autoantibodies in adult patients with myositis

Joanna Parkes (3454196)
Simon Rothwell (283321)
Alexander Oldroyd (5354216)
Hector Chinoy (283330)
Janine Lamb (3454202)

June 2018

Table S1. Immunochip study data included in analyses. Assigned latitude and numbers of PM, DM and co...

Tsutomu Takeuchi (163145)
Nobuyuki Miyasaka (12600)
Takashi Inui (821466)
Toshiro Yano (4411327)
Toru Yoshinari (2584039)
Tohru Abe (4411324)
Takao Koike (186334)

September 2017

Stratification of patients based on RF and anti-CCP titers at week 0. (PDF 419 kb

Additional file 1: of T-cell transcriptomics from peripheral blood highlights differences between polymyositis and dermatomyositis patients

Miranda Houtman (5700545)
Louise Ekholm (5567462)
Espen Hesselberg (5700548)
Karine Chemin (221751)
Vivianne Malmström (4151)
Ann Reed (5700551)
Ingrid Lundberg (3497318)
Leonid Padyukov (39206)

August 2018

Additional clinical characteristics of patients included in this study. Tables S1–S3 provide additio...

Additional file 2: of T-cell transcriptomics from peripheral blood highlights differences between polymyositis and dermatomyositis patients

Miranda Houtman (5700545)
Louise Ekholm (5567462)
Espen Hesselberg (5700548)
Karine Chemin (221751)
Vivianne Malmström (4151)
Ann Reed (5700551)
Ingrid Lundberg (3497318)
Leonid Padyukov (39206)

August 2018

Differentially expressed genes for CD4+ T cells of PM and DM patients. Table S6 and S7 provide diffe...

Additional file 6: of T-cell transcriptomics from peripheral blood highlights differences between polymyositis and dermatomyositis patients

Miranda Houtman (5700545)
Louise Ekholm (5567462)
Espen Hesselberg (5700548)
Karine Chemin (221751)
Vivianne Malmström (4151)
Ann Reed (5700551)
Ingrid Lundberg (3497318)
Leonid Padyukov (39206)

August 2018

Differentially expressed genes in CD4+ T cells of HLA-DRB1*03-positive and -negative myositis patien...

MOESM4 of Pyruvate kinase M2 and the mitochondrial ATPase Inhibitory Factor 1 provide novel biomarkers of dermatomyositis: a metabolic link to oncogenesis

Fulvio Santacatterina (3739348)
María Sánchez-Aragó (720459)
Marc Catalán-García (3739339)
Glòria Garrabou (3739351)
Cristina Arenas (3739354)
Josep Grau (3739342)
Francesc Cardellach (273503)
José Cuezva (3739345)

February 2017

Additional file 4: Figure S3. Plasma levels of PKM2 by ELISA and RPPA. a Determination of PKM2 by EL...

Additional file 8: of Dysregulation of RasGRP1 in rheumatoid arthritis and modulation of RasGRP3 as a biomarker of TNFα inhibitors

Marie-Laure Golinski (786439)
Thibault Vandhuick (3441770)
Céline Derambure (786435)
Manuel Fréret (786436)
Matthieu Lecuyer (3441773)
Clément Guillou (786434)
Martine Hiron (3441767)
Olivier Boyer (211211)
Xavier Le Loët (408285)
Olivier Vittecoq (408284)
Thierry Lequerré (786441)

December 2015

A model of RasGRP1 regulation by TNFα. In T cells, TNFα binding to TNF receptor-1 (TNFR1) leads to a...

Additional file 4: of Dysregulation of RasGRP1 in rheumatoid arthritis and modulation of RasGRP3 as a biomarker of TNFα inhibitors

Marie-Laure Golinski (786439)
Thibault Vandhuick (3441770)
Céline Derambure (786435)
Manuel Fréret (786436)
Matthieu Lecuyer (3441773)
Clément Guillou (786434)
Martine Hiron (3441767)
Olivier Boyer (211211)
Xavier Le Loët (408285)
Olivier Vittecoq (408284)
Thierry Lequerré (786441)

December 2015

T and B cell purity. After negative selection of peripheral blood mononuclear cells from healthy con...

Additional file 2: of Serum levels of B-cell activating factor of the TNF family (BAFF) correlate with anti-Jo-1 autoantibodies levels and disease activity in patients with anti-Jo-1positive polymyositis and dermatomyositis

Abstract

Extracted data

Additional file 2: of Serum levels of B-cell activating factor of the TNF family (BAFF) correlate with anti-Jo-1 autoantibodies levels and disease activity in patients with anti-Jo-1positive polymyositis and dermatomyositis

Abstract

Extracted data

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