List of the main families of molecules for the venom components found in NGS transcriptomic analysis.

Table_3_Alternative Transcription at Venom Genes and Its Role as a Complementary Mechanism for the Generation of Venom Complexity in the Common House Spider.XLSX

Robert A. Haney (6630059)
Taylor Matte (6630062)
FitzAnthony S. Forsyth (6630065)
Jessica E. Garb (30787)

April 2019

The complex composition of venom, a proteinaceous secretion used by diverse animal groups for predat...

List of TaHsp90 genes retrieved from NCBI database for analyzing nucleotides and amino acid sequences.

Harinder Vishwakarma (5447210)
Alim Junaid (5447201)
Jayanand Manjhi (5447204)
Gyanendra Pratap Singh (2833844)
Kishor Gaikwad (3799879)
Jasdeep Chatrath Padaria (5447207)

June 2018

List of TaHsp90 genes retrieved from NCBI database for analyzing nucleotides and amino acid seque...

A list of genes with pairs of alternative isoforms that were identified with peptides in the analysis and that have resolved PDB structures.

Federico Abascal (19467)
Iakes Ezkurdia (250867)
Juan Rodriguez-Rivas (752989)
Jose Manuel Rodriguez (752990)
Angela del Pozo (47491)
Jesús Vázquez (54003)
Alfonso Valencia (1343)
Michael L. Tress (189578)

June 2015

A list of genes with pairs of alternative isoforms that were identified with peptides in the anal...

Summary of toxins retrieved from the proteomic and transcriptomic analysis of venom and venom glands from the four spider species.

Vera Oldrati (3845014)
Dominique Koua (3845020)
Pierre-Marie Allard (1452010)
Nicolas Hulo (13954)
Miriam Arrell (3845017)
Wolfgang Nentwig (201061)
Frédérique Lisacek (262958)
Jean-Luc Wolfender (414138)
Lucia Kuhn-Nentwig (832663)
Reto Stöcklin (112864)

March 2017

Summary of toxins retrieved from the proteomic and transcriptomic analysis of venom and venom gla...

Summary of putative toxins retrieved from the transcriptomic analysis of venom glands from the four spider species.

Vera Oldrati (3845014)
Dominique Koua (3845020)
Pierre-Marie Allard (1452010)
Nicolas Hulo (13954)
Miriam Arrell (3845017)
Wolfgang Nentwig (201061)
Frédérique Lisacek (262958)
Jean-Luc Wolfender (414138)
Lucia Kuhn-Nentwig (832663)
Reto Stöcklin (112864)

March 2017

Summary of putative toxins retrieved from the transcriptomic analysis of venom glands from the fo...

Relative abundance, expressed as FPKM, of subfamilies of the putative venom components found in the NGS analysis of P. nigriventer venom glands.

Marcelo R. V. Diniz (5579615)
Ana L. B. Paiva (5579618)
Clara Guerra-Duarte (5049875)
Milton Y. Nishiyama Jr (470355)
Mauricio A. Mudadu (4318840)
Ursula de Oliveira (5579621)
Márcia H. Borges (5579624)
John R. Yates (30081)
Inácio de L. Junqueira-de-Azevedo (5579627)

August 2018

A) Cysteine-rich peptide toxins and B) Other families of venom components. Unique sequences were ...

List of the species whose mitogenome sequences were used in the phylogenetic analysis.

Jenyfer Fernández-Pérez (4423879)
Ana Nantón (4423876)
Francisco J. Ruiz-Ruano (552181)
Juan Pedro M. Camacho (166697)
Josefina Méndez (335678)

September 2017

List of the species whose mitogenome sequences were used in the phylogenetic analysis.</p

Analyzing venom and body open reading frames for secretion signal sequences, PFAM and gene ontology (GO) annotations, and molecular function enrichment analyses based on GO annotations.

Jeremy Goecks (415165)
Nathan T. Mortimer (282107)
James A. Mobley (365303)
Gregory J. Bowersock (415166)
James Taylor (158393)
Todd A. Schlenke (315260)

May 2013

Analyzing venom and body open reading frames for secretion signal sequences, PFAM and gene ontolo...

Venom protein transcripts amplified from the venom of the Middle American Rattlesnake (Crotalus simus tzabcan) for the four dominant protein families present.

Cassandra M. Modahl (2826140)
Stephen P. Mackessy (2210764)

June 2016

Venom protein transcripts amplified from the venom of the Middle American Rattlesnake (Crotalu...

List of bioinformatic tools for identification of gene and protein homologues.

Florian Jacques (3271500)
Paulina Bolivar (14675341)
Kristian Pietras (84915)
Emma U. Hammarlund (10966182)

February 2023

List of bioinformatic tools for identification of gene and protein homologues.</p

Animal Venoms and Their Components: Molecular Mechanisms of Action

Yuri Utkin

June 2021

Animal venoms comprise numerous toxin families, consisting mainly of peptides and proteins [...

Lists of the top-three families that occur across the greatest number of phyla, for both NQID and prion prediction sets of proteins.

Paul M. Harrison (7942)

March 2019

Lists of the top-three families that occur across the greatest number of phyla, for both NQID and pr...

List of candidate genes used in this study, including details on molecular function, primers, and reference.

Camille Detree (1808404)
Gustavo Núñez-Acuña (3232587)
Steven Roberts (62573)
Cristian Gallardo-Escárate (545697)

October 2016

List of candidate genes used in this study, including details on molecular function, primers, and...

Diversity and abundance of putative venom components from P. nigriventer venom gland transcriptome sequenced by NGS.

Marcelo R. V. Diniz (5579615)
Ana L. B. Paiva (5579618)
Clara Guerra-Duarte (5049875)
Milton Y. Nishiyama Jr (470355)
Mauricio A. Mudadu (4318840)
Ursula de Oliveira (5579621)
Márcia H. Borges (5579624)
John R. Yates (30081)
Inácio de L. Junqueira-de-Azevedo (5579627)

August 2018

Unique sequences were searched against UniProt database and classified into known toxin subfamili...

List of candidate genes considered in the present study and respective main functions.

Marika Vitali (5273978)
Corrado Dimauro (3563924)
Rubina Sirri (5819540)
Martina Zappaterra (4917289)
Paolo Zambonelli (5819543)
Elisabetta Manca (5819546)
Dalal Sami (5819549)
Domenico Pietro Lo Fiego (5819552)
Roberta Davoli (4917286)

October 2018

List of candidate genes considered in the present study and respective main functions.</p

Table_3_Alternative Transcription at Venom Genes and Its Role as a Complementary Mechanism for the Generation of Venom Complexity in the Common House Spider.XLSX

Robert A. Haney (6630059)
Taylor Matte (6630062)
FitzAnthony S. Forsyth (6630065)
Jessica E. Garb (30787)

April 2019

The complex composition of venom, a proteinaceous secretion used by diverse animal groups for predat...

List of TaHsp90 genes retrieved from NCBI database for analyzing nucleotides and amino acid sequences.

Harinder Vishwakarma (5447210)
Alim Junaid (5447201)
Jayanand Manjhi (5447204)
Gyanendra Pratap Singh (2833844)
Kishor Gaikwad (3799879)
Jasdeep Chatrath Padaria (5447207)

June 2018

List of TaHsp90 genes retrieved from NCBI database for analyzing nucleotides and amino acid seque...

A list of genes with pairs of alternative isoforms that were identified with peptides in the analysis and that have resolved PDB structures.

Federico Abascal (19467)
Iakes Ezkurdia (250867)
Juan Rodriguez-Rivas (752989)
Jose Manuel Rodriguez (752990)
Angela del Pozo (47491)
Jesús Vázquez (54003)
Alfonso Valencia (1343)
Michael L. Tress (189578)

June 2015

A list of genes with pairs of alternative isoforms that were identified with peptides in the anal...

Summary of toxins retrieved from the proteomic and transcriptomic analysis of venom and venom glands from the four spider species.

Vera Oldrati (3845014)
Dominique Koua (3845020)
Pierre-Marie Allard (1452010)
Nicolas Hulo (13954)
Miriam Arrell (3845017)
Wolfgang Nentwig (201061)
Frédérique Lisacek (262958)
Jean-Luc Wolfender (414138)
Lucia Kuhn-Nentwig (832663)
Reto Stöcklin (112864)

March 2017

Summary of toxins retrieved from the proteomic and transcriptomic analysis of venom and venom gla...

Summary of putative toxins retrieved from the transcriptomic analysis of venom glands from the four spider species.

Vera Oldrati (3845014)
Dominique Koua (3845020)
Pierre-Marie Allard (1452010)
Nicolas Hulo (13954)
Miriam Arrell (3845017)
Wolfgang Nentwig (201061)
Frédérique Lisacek (262958)
Jean-Luc Wolfender (414138)
Lucia Kuhn-Nentwig (832663)
Reto Stöcklin (112864)

March 2017

Summary of putative toxins retrieved from the transcriptomic analysis of venom glands from the fo...

Relative abundance, expressed as FPKM, of subfamilies of the putative venom components found in the NGS analysis of P. nigriventer venom glands.

Marcelo R. V. Diniz (5579615)
Ana L. B. Paiva (5579618)
Clara Guerra-Duarte (5049875)
Milton Y. Nishiyama Jr (470355)
Mauricio A. Mudadu (4318840)
Ursula de Oliveira (5579621)
Márcia H. Borges (5579624)
John R. Yates (30081)
Inácio de L. Junqueira-de-Azevedo (5579627)

August 2018

A) Cysteine-rich peptide toxins and B) Other families of venom components. Unique sequences were ...

List of the species whose mitogenome sequences were used in the phylogenetic analysis.

Jenyfer Fernández-Pérez (4423879)
Ana Nantón (4423876)
Francisco J. Ruiz-Ruano (552181)
Juan Pedro M. Camacho (166697)
Josefina Méndez (335678)

September 2017

List of the species whose mitogenome sequences were used in the phylogenetic analysis.</p

Analyzing venom and body open reading frames for secretion signal sequences, PFAM and gene ontology (GO) annotations, and molecular function enrichment analyses based on GO annotations.

Jeremy Goecks (415165)
Nathan T. Mortimer (282107)
James A. Mobley (365303)
Gregory J. Bowersock (415166)
James Taylor (158393)
Todd A. Schlenke (315260)

May 2013

Analyzing venom and body open reading frames for secretion signal sequences, PFAM and gene ontolo...

Venom protein transcripts amplified from the venom of the Middle American Rattlesnake (Crotalus simus tzabcan) for the four dominant protein families present.

Cassandra M. Modahl (2826140)
Stephen P. Mackessy (2210764)

June 2016

Venom protein transcripts amplified from the venom of the Middle American Rattlesnake (Crotalu...

List of bioinformatic tools for identification of gene and protein homologues.

Florian Jacques (3271500)
Paulina Bolivar (14675341)
Kristian Pietras (84915)
Emma U. Hammarlund (10966182)

February 2023

List of bioinformatic tools for identification of gene and protein homologues.</p

Animal Venoms and Their Components: Molecular Mechanisms of Action

Yuri Utkin

June 2021

Animal venoms comprise numerous toxin families, consisting mainly of peptides and proteins [...

Lists of the top-three families that occur across the greatest number of phyla, for both NQID and prion prediction sets of proteins.

Paul M. Harrison (7942)

March 2019

Lists of the top-three families that occur across the greatest number of phyla, for both NQID and pr...

List of candidate genes used in this study, including details on molecular function, primers, and reference.

Camille Detree (1808404)
Gustavo Núñez-Acuña (3232587)
Steven Roberts (62573)
Cristian Gallardo-Escárate (545697)

October 2016

List of candidate genes used in this study, including details on molecular function, primers, and...

Diversity and abundance of putative venom components from P. nigriventer venom gland transcriptome sequenced by NGS.

Marcelo R. V. Diniz (5579615)
Ana L. B. Paiva (5579618)
Clara Guerra-Duarte (5049875)
Milton Y. Nishiyama Jr (470355)
Mauricio A. Mudadu (4318840)
Ursula de Oliveira (5579621)
Márcia H. Borges (5579624)
John R. Yates (30081)
Inácio de L. Junqueira-de-Azevedo (5579627)

August 2018

Unique sequences were searched against UniProt database and classified into known toxin subfamili...

List of candidate genes considered in the present study and respective main functions.

Marika Vitali (5273978)
Corrado Dimauro (3563924)
Rubina Sirri (5819540)
Martina Zappaterra (4917289)
Paolo Zambonelli (5819543)
Elisabetta Manca (5819546)
Dalal Sami (5819549)
Domenico Pietro Lo Fiego (5819552)
Roberta Davoli (4917286)

October 2018

List of candidate genes considered in the present study and respective main functions.</p

Table_3_Alternative Transcription at Venom Genes and Its Role as a Complementary Mechanism for the Generation of Venom Complexity in the Common House Spider.XLSX

Robert A. Haney (6630059)
Taylor Matte (6630062)
FitzAnthony S. Forsyth (6630065)
Jessica E. Garb (30787)

April 2019

The complex composition of venom, a proteinaceous secretion used by diverse animal groups for predat...

List of TaHsp90 genes retrieved from NCBI database for analyzing nucleotides and amino acid sequences.

Harinder Vishwakarma (5447210)
Alim Junaid (5447201)
Jayanand Manjhi (5447204)
Gyanendra Pratap Singh (2833844)
Kishor Gaikwad (3799879)
Jasdeep Chatrath Padaria (5447207)

June 2018

List of TaHsp90 genes retrieved from NCBI database for analyzing nucleotides and amino acid seque...

A list of genes with pairs of alternative isoforms that were identified with peptides in the analysis and that have resolved PDB structures.

Federico Abascal (19467)
Iakes Ezkurdia (250867)
Juan Rodriguez-Rivas (752989)
Jose Manuel Rodriguez (752990)
Angela del Pozo (47491)
Jesús Vázquez (54003)
Alfonso Valencia (1343)
Michael L. Tress (189578)

June 2015

A list of genes with pairs of alternative isoforms that were identified with peptides in the anal...

List of the main families of molecules for the venom components found in NGS transcriptomic analysis.

Abstract

Extracted data

List of the main families of molecules for the venom components found in NGS transcriptomic analysis.

Abstract

Extracted data

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