H2Db:Kb peptides used for spectral library generation

A tissue-based draft map of the murine MHC class I immunopeptidome.

Schuster, Heiko
Shao, Wenguang
Weiss, Tobias
Pedrioli, Patrick G A
Roth, Patrick
Weller, Michael
Campbell, David S
Deutsch, Eric W
Moritz, Robert L
Planz, Oliver
Rammensee, Hans-Georg
Aebersold, Ruedi
Caron, Etienne

August 2018

The large array of peptides presented to CD8+ T cells by major histocompatibility complex (MHC) clas...

Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics

Lam, Henry
Aebersold, Ruedi

January 2011

Spectral library searching is an emerging approach in peptide identifications from tandem mass spect...

Information on the most antigenic peptide identified visually from the pilot screening with desalted peptides.

Bruno Cesar Bremer Hinckel (6668075)
Tegwen Marlais (6080102)
Stephanie Airs (6080117)
Tapan Bhattacharyya (172083)
Hideo Imamura (62469)
Jean-Claude Dujardin (56958)
Sayda El-Safi (241936)
Om Prakash Singh (125511)
Shyam Sundar (58354)
Andrew Keith Falconar (6668078)
Bjorn Andersson (16837)
Sergey Litvinov (4724943)
Michael A. Miles (43726)
Pascal Mertens (263437)

May 2019

Column ‘v2 ID’ and ‘v2 gene product’ refer to the improved LdBPK reference genome.</p

List of filtered high-confidence H2Kb peptides

Ruedi Aebersold (3175)
Etienne Caron (3227574)
David S Campbell (5322503)
Eric EW Deutsch (5322497)
Patrick Roth (803769)
Michael Weller (329740)
Robert L Moritz (5322506)
Oliver Planz (36031)
Heiko Schuster (3366821)
Wenguang Shao (1939411)
Tobias Weiss (2092234)
Han-Georg Rammensee (5322500)
Patrick Pedrioli (157501)

August 2018

Filtered list of high-confidence H2Kb peptides (8-9aa; NetMHC<500nM; 1% FDR) from 19 mouse tissues a...

List of unfiltered H2Db peptides (7-14 mers)

Ruedi Aebersold (3175)
Etienne Caron (3227574)
David S Campbell (5322503)
Eric EW Deutsch (5322497)
Patrick Roth (803769)
Michael Weller (329740)
Robert L Moritz (5322506)
Oliver Planz (36031)
Heiko Schuster (3366821)
Wenguang Shao (1939411)
Tobias Weiss (2092234)
Han-Georg Rammensee (5322500)
Patrick Pedrioli (157501)

August 2018

Unfiltered list of all MS-detectable 7-14 mers identified (1% FDR) from 19 mouse tissues and 4 mouse...

PREDBALB/c: a system for the prediction of peptide binding to H2(d) molecules, a haplotype of the BALB/c mouse

Zhang, G. L.
Srinivasan, K. N.
Veeramani, A.
August, J. T.
Brusic, V.

January 2005

PREDBALB/c is a computational system that predicts peptides binding to the major histocompatibility ...

S9 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Spectral Library created for hydroxyproline analysis from DDA acquisitions of 5 WT mouse femurs c...

MOESM3 of MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones

Sara El Kennani (3629459)
Annie Adrait (2365423)
Alexey Shaytan (3629456)
Saadi Khochbin (137059)
Christophe Bruley (1538218)
Anna Panchenko (3629462)
David Landsman (1763)
Delphine Pflieger (1826524)
JĂŠrĂ´me Govin (3629465)

January 2017

Additional file 3. MS/MS spectra assigned to peptides of H2A and H2B variants with an uncertain prot...

A tissue-based draft map of the murine MHC class I immunopeptidome

Schuster, Heiko
Shao, Wenguang
Weiss, Tobias
Pedrioli, Patrick G A
Roth, Patrick
Weller, Michael
Campbell, David S
Deutsch, Eric W
Moritz, Robert L
Planz, Oliver
Rammensee, Hans-Georg
Aebersold, Ruedi
Caron, Etienne

August 2018

The large array of peptides presented to CD8+ T cells by major histocompatibility complex (MHC) clas...

Spectral clustering in peptidomics studies helps to unravel modification profile of biologically active peptides and enhances peptide identification rate

Menschaert, Gerben
Vandekerckhove, Tom
Landuyt, Bart
Hayakawa, Eisuke
Schoofs, Liliane
Luyten, Walter
Van Criekinge, Wim

January 2009

When studying the set of biologically active peptides (the so-called peptidome) of a cell type, orga...

Mass Spectrometry Analysis and Quantitation of Peptides Presented on the MHC II Molecules of Mouse Spleen Dendritic Cells

Leonia Bozzacco (147652)
Haiqiang Yu (147662)
Henry A. Zebroski (2151451)
Jörn Dengjel (2151448)
Haiteng Deng (138991)
Svetlana Mojsov (147716)
Ralph M. Steinman (49018)

February 2016

Major histocompatibility complex class II (MHC II) molecules are expressed on the surface of antigen...

MHC-II binding results for the identified four peptide segments.

Ambarnil Ghosh (148432)
Shiladitya Chattopadhyay (148442)
Mamta Chawla-Sarkar (148450)
Papiya Nandy (148458)
Ashesh Nandy (148466)

July 2012

Results of the peptide-a, b, c and d submitted to the IEDB T-cell MHC-II binding prediction serve...

HIPdb statistics: a) Targets, b) Cell lines, c) Peptide length, d) Amino acid composition.

Abid Qureshi (276959)
Nishant Thakur (205694)
Manoj Kumar (205700)

January 2013

HIPdb statistics: a) Targets, b) Cell lines, c) Peptide length, d) Amino acid composition.</p

Proportion of detected histone peptides in the adult mouse brain.

Ry Y. Tweedie-Cullen (163338)
Andrea M. Brunner (163344)
Jonas Grossmann (163349)
Safa Mohanna (163353)
David Sichau (163358)
Paolo Nanni (126170)
Christian Panse (163365)
Isabelle M. Mansuy (163371)

May 2012

A) Workflow for the isolation and analysis of long histone peptides from the mouse brain. ...

Representative data of quantitative peptidomics approach to measure changes in peptide levels in pcd mice, relative to WT mice.

Iryna Berezniuk (104384)
Juan J. Sironi (400512)
Jonathan Wardman (400513)
Raymond C. Pasek (400514)
Nicolas F. Berbari (400515)
Bradley K. Yoder (400516)
Lloyd D. Fricker (104397)

April 2013

Representative spectra show the 2+ ions for the D0 to D12-TMAB peaks of the peptide subsequently ...

A tissue-based draft map of the murine MHC class I immunopeptidome.

Schuster, Heiko
Shao, Wenguang
Weiss, Tobias
Pedrioli, Patrick G A
Roth, Patrick
Weller, Michael
Campbell, David S
Deutsch, Eric W
Moritz, Robert L
Planz, Oliver
Rammensee, Hans-Georg
Aebersold, Ruedi
Caron, Etienne

August 2018

The large array of peptides presented to CD8+ T cells by major histocompatibility complex (MHC) clas...

Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics

Lam, Henry
Aebersold, Ruedi

January 2011

Spectral library searching is an emerging approach in peptide identifications from tandem mass spect...

Information on the most antigenic peptide identified visually from the pilot screening with desalted peptides.

Bruno Cesar Bremer Hinckel (6668075)
Tegwen Marlais (6080102)
Stephanie Airs (6080117)
Tapan Bhattacharyya (172083)
Hideo Imamura (62469)
Jean-Claude Dujardin (56958)
Sayda El-Safi (241936)
Om Prakash Singh (125511)
Shyam Sundar (58354)
Andrew Keith Falconar (6668078)
Bjorn Andersson (16837)
Sergey Litvinov (4724943)
Michael A. Miles (43726)
Pascal Mertens (263437)

May 2019

Column ‘v2 ID’ and ‘v2 gene product’ refer to the improved LdBPK reference genome.</p

List of filtered high-confidence H2Kb peptides

Ruedi Aebersold (3175)
Etienne Caron (3227574)
David S Campbell (5322503)
Eric EW Deutsch (5322497)
Patrick Roth (803769)
Michael Weller (329740)
Robert L Moritz (5322506)
Oliver Planz (36031)
Heiko Schuster (3366821)
Wenguang Shao (1939411)
Tobias Weiss (2092234)
Han-Georg Rammensee (5322500)
Patrick Pedrioli (157501)

August 2018

Filtered list of high-confidence H2Kb peptides (8-9aa; NetMHC<500nM; 1% FDR) from 19 mouse tissues a...

List of unfiltered H2Db peptides (7-14 mers)

Ruedi Aebersold (3175)
Etienne Caron (3227574)
David S Campbell (5322503)
Eric EW Deutsch (5322497)
Patrick Roth (803769)
Michael Weller (329740)
Robert L Moritz (5322506)
Oliver Planz (36031)
Heiko Schuster (3366821)
Wenguang Shao (1939411)
Tobias Weiss (2092234)
Han-Georg Rammensee (5322500)
Patrick Pedrioli (157501)

August 2018

Unfiltered list of all MS-detectable 7-14 mers identified (1% FDR) from 19 mouse tissues and 4 mouse...

PREDBALB/c: a system for the prediction of peptide binding to H2(d) molecules, a haplotype of the BALB/c mouse

Zhang, G. L.
Srinivasan, K. N.
Veeramani, A.
August, J. T.
Brusic, V.

January 2005

PREDBALB/c is a computational system that predicts peptides binding to the major histocompatibility ...

S9 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Spectral Library created for hydroxyproline analysis from DDA acquisitions of 5 WT mouse femurs c...

MOESM3 of MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones

Sara El Kennani (3629459)
Annie Adrait (2365423)
Alexey Shaytan (3629456)
Saadi Khochbin (137059)
Christophe Bruley (1538218)
Anna Panchenko (3629462)
David Landsman (1763)
Delphine Pflieger (1826524)
JĂŠrĂ´me Govin (3629465)

January 2017

Additional file 3. MS/MS spectra assigned to peptides of H2A and H2B variants with an uncertain prot...

A tissue-based draft map of the murine MHC class I immunopeptidome

Schuster, Heiko
Shao, Wenguang
Weiss, Tobias
Pedrioli, Patrick G A
Roth, Patrick
Weller, Michael
Campbell, David S
Deutsch, Eric W
Moritz, Robert L
Planz, Oliver
Rammensee, Hans-Georg
Aebersold, Ruedi
Caron, Etienne

August 2018

The large array of peptides presented to CD8+ T cells by major histocompatibility complex (MHC) clas...

Spectral clustering in peptidomics studies helps to unravel modification profile of biologically active peptides and enhances peptide identification rate

Menschaert, Gerben
Vandekerckhove, Tom
Landuyt, Bart
Hayakawa, Eisuke
Schoofs, Liliane
Luyten, Walter
Van Criekinge, Wim

January 2009

When studying the set of biologically active peptides (the so-called peptidome) of a cell type, orga...

Mass Spectrometry Analysis and Quantitation of Peptides Presented on the MHC II Molecules of Mouse Spleen Dendritic Cells

Leonia Bozzacco (147652)
Haiqiang Yu (147662)
Henry A. Zebroski (2151451)
Jörn Dengjel (2151448)
Haiteng Deng (138991)
Svetlana Mojsov (147716)
Ralph M. Steinman (49018)

February 2016

Major histocompatibility complex class II (MHC II) molecules are expressed on the surface of antigen...

MHC-II binding results for the identified four peptide segments.

Ambarnil Ghosh (148432)
Shiladitya Chattopadhyay (148442)
Mamta Chawla-Sarkar (148450)
Papiya Nandy (148458)
Ashesh Nandy (148466)

July 2012

Results of the peptide-a, b, c and d submitted to the IEDB T-cell MHC-II binding prediction serve...

HIPdb statistics: a) Targets, b) Cell lines, c) Peptide length, d) Amino acid composition.

Abid Qureshi (276959)
Nishant Thakur (205694)
Manoj Kumar (205700)

January 2013

HIPdb statistics: a) Targets, b) Cell lines, c) Peptide length, d) Amino acid composition.</p

Proportion of detected histone peptides in the adult mouse brain.

Ry Y. Tweedie-Cullen (163338)
Andrea M. Brunner (163344)
Jonas Grossmann (163349)
Safa Mohanna (163353)
David Sichau (163358)
Paolo Nanni (126170)
Christian Panse (163365)
Isabelle M. Mansuy (163371)

May 2012

A) Workflow for the isolation and analysis of long histone peptides from the mouse brain. ...

Representative data of quantitative peptidomics approach to measure changes in peptide levels in pcd mice, relative to WT mice.

Iryna Berezniuk (104384)
Juan J. Sironi (400512)
Jonathan Wardman (400513)
Raymond C. Pasek (400514)
Nicolas F. Berbari (400515)
Bradley K. Yoder (400516)
Lloyd D. Fricker (104397)

April 2013

Representative spectra show the 2+ ions for the D0 to D12-TMAB peaks of the peptide subsequently ...

A tissue-based draft map of the murine MHC class I immunopeptidome.

Schuster, Heiko
Shao, Wenguang
Weiss, Tobias
Pedrioli, Patrick G A
Roth, Patrick
Weller, Michael
Campbell, David S
Deutsch, Eric W
Moritz, Robert L
Planz, Oliver
Rammensee, Hans-Georg
Aebersold, Ruedi
Caron, Etienne

August 2018

The large array of peptides presented to CD8+ T cells by major histocompatibility complex (MHC) clas...

Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics

Lam, Henry
Aebersold, Ruedi

January 2011

Spectral library searching is an emerging approach in peptide identifications from tandem mass spect...

Information on the most antigenic peptide identified visually from the pilot screening with desalted peptides.

Bruno Cesar Bremer Hinckel (6668075)
Tegwen Marlais (6080102)
Stephanie Airs (6080117)
Tapan Bhattacharyya (172083)
Hideo Imamura (62469)
Jean-Claude Dujardin (56958)
Sayda El-Safi (241936)
Om Prakash Singh (125511)
Shyam Sundar (58354)
Andrew Keith Falconar (6668078)
Bjorn Andersson (16837)
Sergey Litvinov (4724943)
Michael A. Miles (43726)
Pascal Mertens (263437)

May 2019

Column ‘v2 ID’ and ‘v2 gene product’ refer to the improved LdBPK reference genome.</p

H2Db:Kb peptides used for spectral library generation

Abstract

Extracted data

H2Db:Kb peptides used for spectral library generation

Abstract

Extracted data

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