<p>Manhattan plot of the Polymorphic Index Content (PIC) value (Y-axis) for each 500 bp non-overlapping window in the genome (x-axis) across populations 1 (A), 2 (B), and 3 (C). The horizontal red line represents the collective upper 99% percentile of PIC values across the 43 isolates. The loci outlined in red boxes represent the regions that overlapped entire genes.</p
<p>The square box represents the haplotype that the program TCS hypothesized as the ancestral haplot...
Manhattan plot of the Lindley process (local score method with a tuning parameter ξ = 2). The x-axis...
<p>The sampled haplotypes are indicated by circles; the geographical regions from which the sample w...
<p>Manhattan plot of the Polymorphic Index Content (PIC) value (Y-axis) for each 500 bp non-overlapp...
<p>(A) V<sub>ST</sub> values (y-axis) for every non-overlapping 500 bp window across the 8 chromosom...
<p><b>A.</b> Discordant fosmids selected from individual fosmid libraries shown as custom track in U...
<p>The lower panel depicts copy number (Y-axis) of each 500 bp non-overlapping window in the genome ...
<p>Columns represent individuals (X-axis). rDNA copy number is depicted on the Y-axis. Isolates from...
<p>Size of the portion of genome aligned on the reference genome at different coverage levels for th...
<p>Below each bar chart of coverage values is a putative reconstruction of the copy number on each c...
<p><b>The number of entire (A), and partial (B) gene absences and entire (C) and partial (D) gene ga...
This representative subset of the data portrays the distributions of 325 polymorphic markers through...
Bacteroides vulgatus is shown as an example in panels A–E; examples for 24 other species are shown i...
a) Example plots showing mean recombination counts per base calculated over non-overlapping 1000 bp ...
<p>The Y axis is the normalized coverage, i.e. the coverage depth divided by half of the coverage de...
<p>The square box represents the haplotype that the program TCS hypothesized as the ancestral haplot...
Manhattan plot of the Lindley process (local score method with a tuning parameter ξ = 2). The x-axis...
<p>The sampled haplotypes are indicated by circles; the geographical regions from which the sample w...
<p>Manhattan plot of the Polymorphic Index Content (PIC) value (Y-axis) for each 500 bp non-overlapp...
<p>(A) V<sub>ST</sub> values (y-axis) for every non-overlapping 500 bp window across the 8 chromosom...
<p><b>A.</b> Discordant fosmids selected from individual fosmid libraries shown as custom track in U...
<p>The lower panel depicts copy number (Y-axis) of each 500 bp non-overlapping window in the genome ...
<p>Columns represent individuals (X-axis). rDNA copy number is depicted on the Y-axis. Isolates from...
<p>Size of the portion of genome aligned on the reference genome at different coverage levels for th...
<p>Below each bar chart of coverage values is a putative reconstruction of the copy number on each c...
<p><b>The number of entire (A), and partial (B) gene absences and entire (C) and partial (D) gene ga...
This representative subset of the data portrays the distributions of 325 polymorphic markers through...
Bacteroides vulgatus is shown as an example in panels A–E; examples for 24 other species are shown i...
a) Example plots showing mean recombination counts per base calculated over non-overlapping 1000 bp ...
<p>The Y axis is the normalized coverage, i.e. the coverage depth divided by half of the coverage de...
<p>The square box represents the haplotype that the program TCS hypothesized as the ancestral haplot...
Manhattan plot of the Lindley process (local score method with a tuning parameter ξ = 2). The x-axis...
<p>The sampled haplotypes are indicated by circles; the geographical regions from which the sample w...