Additional file 1: of TRH site-specific methylation in oral and oropharyngeal squamous cell carcinoma

C. Puttipanyalears (5599376)
A. Arayataweegool (5599379)
K. Chalertpet (5599382)
P. Rattanachayoto (5599385)
P. Mahattanasakul (5599388)
N. Tangjaturonsasme (5599391)
V. Kerekhanjanarong (5599394)
A. Mutirangura (5599397)
N. Kitkumthorn (5599400)

Publication date

August 2018

DOI

10.6084/m9.figshare.6938855.v1

Abstract

Microsoft Office Excel displayed average methylation percentage of each methylated CpG sites of each sample from the seven GSEs. (XLS 8189 kb

Extracted data

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Data Protection

Additional file 1: of TRH site-specific methylation in oral and oropharyngeal squamous cell carcinoma

C. Puttipanyalears (5599376)
A. Arayataweegool (5599379)
K. Chalertpet (5599382)
P. Rattanachayoto (5599385)
P. Mahattanasakul (5599388)
N. Tangjaturonsasme (5599391)
V. Kerekhanjanarong (5599394)
A. Mutirangura (5599397)
N. Kitkumthorn (5599400)

Open link

Publication date

August 2018

DOI

10.6084/m9.figshare.6938855.v1

Abstract

Microsoft Office Excel displayed average methylation percentage of each methylated CpG sites of each sample from the seven GSEs. (XLS 8189 kb

Extracted data

Katie Huang (3420263)
Thomas Mikeska (274849)
Jason Li (23213)
Elena Takano (3420257)
Ewan Millar (3420266)
Peter Graham (831821)
Samantha Boyle (562679)
Ian Campbell (205212)
Terence Speed (3420260)
Alexander Dobrovic (8304)
Stephen Fox (152886)

October 2015

Comparison of DNA methylation frequency of genes screened in breast carcinomas with the methylation ...

Additional file 2: Table S1. of Targeted bisulfite sequencing identified a panel of DNA methylation-based biomarkers for esophageal squamous cell carcinoma (ESCC)

Weilin Pu (4690006)
Chenji Wang (408890)
Sidi Chen (127044)
Dunmei Zhao (3927128)
Yinghui Zhou (344457)
Yanyun Ma (339117)
Ying Wang (11406)
Caihua Li (4690009)
Zebin Huang (438392)
Li Jin (40265)
Shicheng Guo (171219)
Jiucun Wang (102740)
Minghua Wang (37199)

December 2017

The methylation status of the five CpG sites in the GEO dataset and normal CD4+ and CD8+ T cells. Ta...

Additional file 2: of TRH site-specific methylation in oral and oropharyngeal squamous cell carcinoma

C. Puttipanyalears (5599376)
A. Arayataweegool (5599379)
K. Chalertpet (5599382)
P. Rattanachayoto (5599385)
P. Mahattanasakul (5599388)
N. Tangjaturonsasme (5599391)
V. Kerekhanjanarong (5599394)
A. Mutirangura (5599397)
N. Kitkumthorn (5599400)

August 2018

Demographic data and TRH methylation percentage in screening experiments. (XLS 29 kb

Additional file 3: of TRH site-specific methylation in oral and oropharyngeal squamous cell carcinoma

C. Puttipanyalears (5599376)
A. Arayataweegool (5599379)
K. Chalertpet (5599382)
P. Rattanachayoto (5599385)
P. Mahattanasakul (5599388)
N. Tangjaturonsasme (5599391)
V. Kerekhanjanarong (5599394)
A. Mutirangura (5599397)
N. Kitkumthorn (5599400)

August 2018

Pyrosequencing results of WSU-HN17 showed high level of methylation percentage in all 5 CpG surround...

Additional file 1: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Figure S1. Box plot showing the methylation levels of 14 genes in the control and luminal breast can...

Additional file 1: of The associations of DNA methylation alterations in oxidative stress-related genes with cancer incidence and mortality outcomes: a population-based cohort study

Xīn Gào (6262232)
Yan Zhang (8098)
Barbara Burwinkel (146479)
Yang Xuan (419293)
Bernd Holleczek (287845)
Hermann Brenner (63649)
Ben Schöttker (300688)

January 2019

Table S1. 519 genes coding for proteins involved in pathways from oxidative stress to cancer. Table ...

Additional file 2: of Methylated genomic loci encoding microRNA as a biomarker panel in tissue and saliva for head and neck squamous cell carcinoma

Yu Cao (274482)
Katherine Green (5055230)
Steve Quattlebaum (5055248)
Ben Milam (5055236)
Ling Lu (53325)
Dexiang Gao (5055245)
Hui He (356808)
Ningning Li (566420)
Liwei Gao (794309)
Francis Hall (5055233)
Matthew Whinery (5055239)
Elyse Handley (5055242)
Yi Ma (167857)
Tao Xu (3537)
Feng Jin (303721)
Jing Xiao (356412)
Minjie Wei (154099)
Derek Smith (399177)
Sophia Bornstein (3515549)
Neil Gross (4425496)
Dohun Pyeon (266665)
John Song (437939)
Shi-Long Lu (1912276)

April 2018

Table S1. Relative methylation levels of mgmiRs in human HNSCC cell lines and normal head and neck c...

Additional file 1: Table S1. of TFF1 hypermethylation and decreased expression in esophageal squamous cell carcinoma and histologically normal tumor surrounding esophageal cells

Isabela Gonzaga (4709059)
Sheila Soares Lima (4681483)
Marina Nicolau (4709065)
Pedro Nicolau-Neto (4681480)
Nathalia da Costa (4709056)
Tatiana de Almeida SimĂŁo (4709062)
Hector Hernandez-Vargas (251855)
Zdenko Herceg (251863)
Luis Ribeiro Pinto (4709068)

December 2017

Association between clinicopathological data and TFF1 methylation and expression in healthy esophagu...

Additional file 5: of CpG location and methylation level are crucial factors for the early detection of oral squamous cell carcinoma in brushing samples using bisulfite sequencing of a 13-gene panel

Luca Morandi (324431)
Davide Gissi (4358257)
Achille Tarsitano (4358260)
Sofia Asioli (4358275)
Andrea Gabusi (4358263)
Claudio Marchetti (4358266)
Lucio Montebugnoli (4358269)
Maria Foschini (4358272)

August 2017

LINE1 mean methylation levels among OSCC, HGSIL, normal healthy donors, and contralateral normal muc...

Additional file 4: of CpG location and methylation level are crucial factors for the early detection of oral squamous cell carcinoma in brushing samples using bisulfite sequencing of a 13-gene panel

Luca Morandi (324431)
Davide Gissi (4358257)
Achille Tarsitano (4358260)
Sofia Asioli (4358275)
Andrea Gabusi (4358263)
Claudio Marchetti (4358266)
Lucio Montebugnoli (4358269)
Maria Foschini (4358272)

August 2017

Heatmap from 325 CpG methylation data points (rows) and 130 samples (column). Annotation labels refe...

Additional file 3: Table S2. of Genome-wide DNA methylation profile identified a unique set of differentially methylated immune genes in oral squamous cell carcinoma patients in India

Baidehi Basu (3717586)
Joyeeta Chakraborty (3717592)
Aditi Chandra (3717583)
Atul Katarkar (282856)
Jadav Baldevbhai (3717589)
Debjit Dhar Chowdhury (3717580)
Jay Ray (3717595)
Keya Chaudhuri (90539)
Raghunath Chatterjee (90538)

February 2017

Clinical and demographic charecteristics of the TCGA samples included in this study. Table S3. Hazar...

Additional file 3: of Unique DNA methylation signature in HPV-positive head and neck squamous cell carcinomas

Davide Degli Esposti (72723)
Athena Sklias (3857581)
Sheila Lima (3908227)
StĂŠphanie Beghelli-de la Forest Divonne (3908224)
Vincent Cahais (401764)
Nora Fernandez-Jimenez (193643)
Marie-Pierre Cros (468750)
Szilvia Ecsedi (277982)
Cyrille Cuenin (487673)
Liacine Bouaoun (3438113)
Graham Byrnes (66091)
Rosita Accardi (269874)
Anne Sudaka (3908230)
ValĂŠrie Giordanengo (3908239)
Hector Hernandez-Vargas (251855)
Luis Pinto (3908233)
Ellen Van Obberghen-Schilling (3908248)
Zdenko Herceg (251863)

April 2017

Published methylation signatures in HNSCCs. Ad hoc pathway analysis of common hyper- and hypomethyla...

Additional file 1: of Gene promoter and exon DNA methylation changes in colon cancer development – mRNA expression and tumor mutation alterations

Béla Molnár (123745)
Orsolya Galamb (123720)
Bálint Péterfia (130981)
Barnabás Wichmann (123721)
István Csabai (130985)
András Bodor (439486)
Alexandra Kalmár (123738)
Krisztina Szigeti (5454470)
Barbara Barták (764299)
Zsófia Nagy (3515417)
Gábor Valcz (466332)
Árpád Patai (785267)
Péter Igaz (628519)
Zsolt Tulassay (123741)

June 2018

Table S1A. Top50 hypermethylated DMRs in CRC versus NAT comparison. Table S1B. Top50 hypomethylated ...

Katie Huang (3420263)
Thomas Mikeska (274849)
Jason Li (23213)
Elena Takano (3420257)
Ewan Millar (3420266)
Peter Graham (831821)
Samantha Boyle (562679)
Ian Campbell (205212)
Terence Speed (3420260)
Alexander Dobrovic (8304)
Stephen Fox (152886)

October 2015

Comparison of DNA methylation frequency of genes screened in breast carcinomas with the methylation ...

Additional file 2: Table S1. of Targeted bisulfite sequencing identified a panel of DNA methylation-based biomarkers for esophageal squamous cell carcinoma (ESCC)

Weilin Pu (4690006)
Chenji Wang (408890)
Sidi Chen (127044)
Dunmei Zhao (3927128)
Yinghui Zhou (344457)
Yanyun Ma (339117)
Ying Wang (11406)
Caihua Li (4690009)
Zebin Huang (438392)
Li Jin (40265)
Shicheng Guo (171219)
Jiucun Wang (102740)
Minghua Wang (37199)

December 2017

The methylation status of the five CpG sites in the GEO dataset and normal CD4+ and CD8+ T cells. Ta...

Additional file 2: of TRH site-specific methylation in oral and oropharyngeal squamous cell carcinoma

C. Puttipanyalears (5599376)
A. Arayataweegool (5599379)
K. Chalertpet (5599382)
P. Rattanachayoto (5599385)
P. Mahattanasakul (5599388)
N. Tangjaturonsasme (5599391)
V. Kerekhanjanarong (5599394)
A. Mutirangura (5599397)
N. Kitkumthorn (5599400)

August 2018

Demographic data and TRH methylation percentage in screening experiments. (XLS 29 kb

Additional file 3: of TRH site-specific methylation in oral and oropharyngeal squamous cell carcinoma

C. Puttipanyalears (5599376)
A. Arayataweegool (5599379)
K. Chalertpet (5599382)
P. Rattanachayoto (5599385)
P. Mahattanasakul (5599388)
N. Tangjaturonsasme (5599391)
V. Kerekhanjanarong (5599394)
A. Mutirangura (5599397)
N. Kitkumthorn (5599400)

August 2018

Pyrosequencing results of WSU-HN17 showed high level of methylation percentage in all 5 CpG surround...

Additional file 1: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Figure S1. Box plot showing the methylation levels of 14 genes in the control and luminal breast can...

Additional file 1: of The associations of DNA methylation alterations in oxidative stress-related genes with cancer incidence and mortality outcomes: a population-based cohort study

Xīn Gào (6262232)
Yan Zhang (8098)
Barbara Burwinkel (146479)
Yang Xuan (419293)
Bernd Holleczek (287845)
Hermann Brenner (63649)
Ben Schöttker (300688)

January 2019

Table S1. 519 genes coding for proteins involved in pathways from oxidative stress to cancer. Table ...

Additional file 2: of Methylated genomic loci encoding microRNA as a biomarker panel in tissue and saliva for head and neck squamous cell carcinoma

Yu Cao (274482)
Katherine Green (5055230)
Steve Quattlebaum (5055248)
Ben Milam (5055236)
Ling Lu (53325)
Dexiang Gao (5055245)
Hui He (356808)
Ningning Li (566420)
Liwei Gao (794309)
Francis Hall (5055233)
Matthew Whinery (5055239)
Elyse Handley (5055242)
Yi Ma (167857)
Tao Xu (3537)
Feng Jin (303721)
Jing Xiao (356412)
Minjie Wei (154099)
Derek Smith (399177)
Sophia Bornstein (3515549)
Neil Gross (4425496)
Dohun Pyeon (266665)
John Song (437939)
Shi-Long Lu (1912276)

April 2018

Table S1. Relative methylation levels of mgmiRs in human HNSCC cell lines and normal head and neck c...

Additional file 1: Table S1. of TFF1 hypermethylation and decreased expression in esophageal squamous cell carcinoma and histologically normal tumor surrounding esophageal cells

Isabela Gonzaga (4709059)
Sheila Soares Lima (4681483)
Marina Nicolau (4709065)
Pedro Nicolau-Neto (4681480)
Nathalia da Costa (4709056)
Tatiana de Almeida SimĂŁo (4709062)
Hector Hernandez-Vargas (251855)
Zdenko Herceg (251863)
Luis Ribeiro Pinto (4709068)

December 2017

Association between clinicopathological data and TFF1 methylation and expression in healthy esophagu...

Additional file 5: of CpG location and methylation level are crucial factors for the early detection of oral squamous cell carcinoma in brushing samples using bisulfite sequencing of a 13-gene panel

Luca Morandi (324431)
Davide Gissi (4358257)
Achille Tarsitano (4358260)
Sofia Asioli (4358275)
Andrea Gabusi (4358263)
Claudio Marchetti (4358266)
Lucio Montebugnoli (4358269)
Maria Foschini (4358272)

August 2017

LINE1 mean methylation levels among OSCC, HGSIL, normal healthy donors, and contralateral normal muc...

Additional file 4: of CpG location and methylation level are crucial factors for the early detection of oral squamous cell carcinoma in brushing samples using bisulfite sequencing of a 13-gene panel

Luca Morandi (324431)
Davide Gissi (4358257)
Achille Tarsitano (4358260)
Sofia Asioli (4358275)
Andrea Gabusi (4358263)
Claudio Marchetti (4358266)
Lucio Montebugnoli (4358269)
Maria Foschini (4358272)

August 2017

Heatmap from 325 CpG methylation data points (rows) and 130 samples (column). Annotation labels refe...

Additional file 3: Table S2. of Genome-wide DNA methylation profile identified a unique set of differentially methylated immune genes in oral squamous cell carcinoma patients in India

Baidehi Basu (3717586)
Joyeeta Chakraborty (3717592)
Aditi Chandra (3717583)
Atul Katarkar (282856)
Jadav Baldevbhai (3717589)
Debjit Dhar Chowdhury (3717580)
Jay Ray (3717595)
Keya Chaudhuri (90539)
Raghunath Chatterjee (90538)

February 2017

Clinical and demographic charecteristics of the TCGA samples included in this study. Table S3. Hazar...

Additional file 3: of Unique DNA methylation signature in HPV-positive head and neck squamous cell carcinomas

Davide Degli Esposti (72723)
Athena Sklias (3857581)
Sheila Lima (3908227)
StĂŠphanie Beghelli-de la Forest Divonne (3908224)
Vincent Cahais (401764)
Nora Fernandez-Jimenez (193643)
Marie-Pierre Cros (468750)
Szilvia Ecsedi (277982)
Cyrille Cuenin (487673)
Liacine Bouaoun (3438113)
Graham Byrnes (66091)
Rosita Accardi (269874)
Anne Sudaka (3908230)
ValĂŠrie Giordanengo (3908239)
Hector Hernandez-Vargas (251855)
Luis Pinto (3908233)
Ellen Van Obberghen-Schilling (3908248)
Zdenko Herceg (251863)

April 2017

Published methylation signatures in HNSCCs. Ad hoc pathway analysis of common hyper- and hypomethyla...

Additional file 1: of Gene promoter and exon DNA methylation changes in colon cancer development – mRNA expression and tumor mutation alterations

Béla Molnár (123745)
Orsolya Galamb (123720)
Bálint Péterfia (130981)
Barnabás Wichmann (123721)
István Csabai (130985)
András Bodor (439486)
Alexandra Kalmár (123738)
Krisztina Szigeti (5454470)
Barbara Barták (764299)
Zsófia Nagy (3515417)
Gábor Valcz (466332)
Árpád Patai (785267)
Péter Igaz (628519)
Zsolt Tulassay (123741)

June 2018

Table S1A. Top50 hypermethylated DMRs in CRC versus NAT comparison. Table S1B. Top50 hypomethylated ...

Katie Huang (3420263)
Thomas Mikeska (274849)
Jason Li (23213)
Elena Takano (3420257)
Ewan Millar (3420266)
Peter Graham (831821)
Samantha Boyle (562679)
Ian Campbell (205212)
Terence Speed (3420260)
Alexander Dobrovic (8304)
Stephen Fox (152886)

October 2015

Comparison of DNA methylation frequency of genes screened in breast carcinomas with the methylation ...

Additional file 2: Table S1. of Targeted bisulfite sequencing identified a panel of DNA methylation-based biomarkers for esophageal squamous cell carcinoma (ESCC)

Weilin Pu (4690006)
Chenji Wang (408890)
Sidi Chen (127044)
Dunmei Zhao (3927128)
Yinghui Zhou (344457)
Yanyun Ma (339117)
Ying Wang (11406)
Caihua Li (4690009)
Zebin Huang (438392)
Li Jin (40265)
Shicheng Guo (171219)
Jiucun Wang (102740)
Minghua Wang (37199)

December 2017

The methylation status of the five CpG sites in the GEO dataset and normal CD4+ and CD8+ T cells. Ta...

Additional file 1: of TRH site-specific methylation in oral and oropharyngeal squamous cell carcinoma

Abstract

Extracted data

Additional file 1: of TRH site-specific methylation in oral and oropharyngeal squamous cell carcinoma

Abstract

Extracted data

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