MOESM1 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Data from: Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Lukindu, Martin
Bergey, Christina M.
Wiltshire, Rachel M.
Small, Scott T.
Bourke, Brian P.
Kayondo, Jonathan K.
Besansky, Nora J.

February 2019

Background: Understanding population genetic structure in the malaria vector Anopheles gambiae (s.s....

MOESM5 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Amy Lynd (36646)
Samuel Gonahasa (6456752)
Sarah Staedke (3569942)
Ambrose Oruni (5940008)
Catherine Maiteki-Sebuguzi (51371)
Grant Dorsey (18025)
Jimmy Opigo (3934103)
Adoke Yeka (18017)
Agaba Katureebe (340952)
Mary Kyohere (6456755)
Janet Hemingway (23878)
Moses Kamya (10698)
Martin Donnelly (191434)

March 2019

Additional file 5: Table S1. Resistance and polytene chromosome allele frequencies in Anopheles gamb...

Anopheles gambiae dataset

Mwakalinga, Victoria
Sartorius, Benn
Limwagu, Alex
Mlacha, Yeromin
Msellemu, Daniel
Chaki, Prosper
Govella, Nicoderm
Coetzee, Maureen
Dongus, Stefan
Killeen, Gerry

April 2018

The dataset contains densities of mosquito vector collected in different locations in Dar es Salaam ...

MOESM7 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 7: Figure S3. Generalized linear model plot of genetic differentiation against log g...

MOESM2 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 2: Table S2. Bioinformatics pipeline detailing software programs and parameters used...

MOESM5 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 5: Figure S1. (aâd) PCA plots of An. gambiae chromosomes not shown in the main tex...

MOESM3 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 3: Table S3. Kinship coefficient estimates and percentage missing data values per in...

MOESM4 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 4: Table S4. Chromosome 2L inversion molecular karyotype results

MOESM6 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 6: Figure S2. ADMIXTURE bar plot of chromosome 2L SNPs (K = 2) showing probable ance...

Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel M. Wiltshire
Christina M. Bergey
Jonathan K. Kayondo
Josephine Birungi
Louis G. Mukwaya
Scott J. Emrich
Nora J. Besansky
Frank H. Collins

August 2018

Abstract Background Malaria is the leading cause of global paediatric mortality in children below 5 ...

Data from: Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Lukindu, Martin
Bergey, Christina M.
Wiltshire, Rachel M.
Small, Scott T.
Bourke, Brian P.
Kayondo, Jonathan K.
Besansky, Nora J.

February 2019

Background: Understanding population genetic structure in the malaria vector Anopheles gambiae (s.s....

Data from: Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Lukindu, Martin
Bergey, Christina M.
Wiltshire, Rachel M.
Small, Scott T.
Bourke, Brian P.
Kayondo, Jonathan K.
Besansky, Nora J.

April 2018

Background: Understanding population genetic structure in the malaria vector Anopheles gambiae (s.s....

Data from: Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Lukindu, Martin
Bergey, Christina M.
Wiltshire, Rachel M.
Small, Scott T.
Bourke, Brian P.
Kayondo, Jonathan K.
Besansky, Nora J.

Background: Understanding population genetic structure in the malaria vector Anopheles gambiae (s.s....

Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Martin Lukindu
Christina M. Bergey
Rachel M. Wiltshire
Scott T. Small
Brian P. Bourke
Jonathan K. Kayondo
Nora J. Besansky

April 2018

Abstract Background Understanding population genetic structure in the malaria vector Anopheles gambi...

Data from: Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Lukindu, Martin
Bergey, Christina M.
Wiltshire, Rachel M.
Small, Scott T.
Bourke, Brian P.
Kayondo, Jonathan K.
Besansky, Nora J.

April 2018

Background: Understanding population genetic structure in the malaria vector Anopheles gambiae (s.s....

Data from: Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Lukindu, Martin
Bergey, Christina M.
Wiltshire, Rachel M.
Small, Scott T.
Bourke, Brian P.
Kayondo, Jonathan K.
Besansky, Nora J.

February 2019

Background: Understanding population genetic structure in the malaria vector Anopheles gambiae (s.s....

MOESM5 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Amy Lynd (36646)
Samuel Gonahasa (6456752)
Sarah Staedke (3569942)
Ambrose Oruni (5940008)
Catherine Maiteki-Sebuguzi (51371)
Grant Dorsey (18025)
Jimmy Opigo (3934103)
Adoke Yeka (18017)
Agaba Katureebe (340952)
Mary Kyohere (6456755)
Janet Hemingway (23878)
Moses Kamya (10698)
Martin Donnelly (191434)

March 2019

Additional file 5: Table S1. Resistance and polytene chromosome allele frequencies in Anopheles gamb...

Anopheles gambiae dataset

Mwakalinga, Victoria
Sartorius, Benn
Limwagu, Alex
Mlacha, Yeromin
Msellemu, Daniel
Chaki, Prosper
Govella, Nicoderm
Coetzee, Maureen
Dongus, Stefan
Killeen, Gerry

April 2018

The dataset contains densities of mosquito vector collected in different locations in Dar es Salaam ...

MOESM7 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 7: Figure S3. Generalized linear model plot of genetic differentiation against log g...

MOESM2 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 2: Table S2. Bioinformatics pipeline detailing software programs and parameters used...

MOESM5 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 5: Figure S1. (aâd) PCA plots of An. gambiae chromosomes not shown in the main tex...

MOESM3 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 3: Table S3. Kinship coefficient estimates and percentage missing data values per in...

MOESM4 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 4: Table S4. Chromosome 2L inversion molecular karyotype results

MOESM6 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 6: Figure S2. ADMIXTURE bar plot of chromosome 2L SNPs (K = 2) showing probable ance...

Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel M. Wiltshire
Christina M. Bergey
Jonathan K. Kayondo
Josephine Birungi
Louis G. Mukwaya
Scott J. Emrich
Nora J. Besansky
Frank H. Collins

August 2018

Abstract Background Malaria is the leading cause of global paediatric mortality in children below 5 ...

Data from: Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Lukindu, Martin
Bergey, Christina M.
Wiltshire, Rachel M.
Small, Scott T.
Bourke, Brian P.
Kayondo, Jonathan K.
Besansky, Nora J.

February 2019

Background: Understanding population genetic structure in the malaria vector Anopheles gambiae (s.s....

Data from: Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Lukindu, Martin
Bergey, Christina M.
Wiltshire, Rachel M.
Small, Scott T.
Bourke, Brian P.
Kayondo, Jonathan K.
Besansky, Nora J.

April 2018

Background: Understanding population genetic structure in the malaria vector Anopheles gambiae (s.s....

Data from: Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Lukindu, Martin
Bergey, Christina M.
Wiltshire, Rachel M.
Small, Scott T.
Bourke, Brian P.
Kayondo, Jonathan K.
Besansky, Nora J.

Background: Understanding population genetic structure in the malaria vector Anopheles gambiae (s.s....

Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Martin Lukindu
Christina M. Bergey
Rachel M. Wiltshire
Scott T. Small
Brian P. Bourke
Jonathan K. Kayondo
Nora J. Besansky

April 2018

Abstract Background Understanding population genetic structure in the malaria vector Anopheles gambi...

Data from: Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Lukindu, Martin
Bergey, Christina M.
Wiltshire, Rachel M.
Small, Scott T.
Bourke, Brian P.
Kayondo, Jonathan K.
Besansky, Nora J.

April 2018

Background: Understanding population genetic structure in the malaria vector Anopheles gambiae (s.s....

Data from: Spatio-temporal genetic structure of Anopheles gambiae in the Northwestern Lake Victoria Basin, Uganda: implications for genetic control trials in malaria endemic regions

Lukindu, Martin
Bergey, Christina M.
Wiltshire, Rachel M.
Small, Scott T.
Bourke, Brian P.
Kayondo, Jonathan K.
Besansky, Nora J.

February 2019

Background: Understanding population genetic structure in the malaria vector Anopheles gambiae (s.s....

MOESM5 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Amy Lynd (36646)
Samuel Gonahasa (6456752)
Sarah Staedke (3569942)
Ambrose Oruni (5940008)
Catherine Maiteki-Sebuguzi (51371)
Grant Dorsey (18025)
Jimmy Opigo (3934103)
Adoke Yeka (18017)
Agaba Katureebe (340952)
Mary Kyohere (6456755)
Janet Hemingway (23878)
Moses Kamya (10698)
Martin Donnelly (191434)

March 2019

Additional file 5: Table S1. Resistance and polytene chromosome allele frequencies in Anopheles gamb...

Anopheles gambiae dataset

Mwakalinga, Victoria
Sartorius, Benn
Limwagu, Alex
Mlacha, Yeromin
Msellemu, Daniel
Chaki, Prosper
Govella, Nicoderm
Coetzee, Maureen
Dongus, Stefan
Killeen, Gerry

April 2018

The dataset contains densities of mosquito vector collected in different locations in Dar es Salaam ...

MOESM1 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Abstract

Extracted data

MOESM1 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Abstract

Extracted data

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