Additional file 5: of Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis

Additional file 5 of Epigenetic and transcriptomic alterations in offspring born to women with type 1 diabetes (the EPICOM study)

Sine Knorr (13845960)
Anne Skakkebæk (5949806)
Jesper Just (467951)
Emma B. Johannsen (13138650)
Christian Trolle (437205)
Søren Vang (44472)
Zuzana Lohse (13845963)
Birgitte Bytoft (3628355)
Peter Damm (328004)
Kurt Højlund (92930)
Dorte M. Jensen (13845966)
Claus H. Gravholt (13138665)

September 2022

Additional file 5: Figure F2. Network plots depicting the genes that are involved in the significant...

Additional file 2: of Disease-specific regulation of gene expression in a comparative analysis of juvenile idiopathic arthritis and inflammatory bowel disease

Angela Mo (5461751)
Urko Marigorta (5461757)
Dalia Arafat (390047)
Lai Chan (5461754)
Lori Ponder (5461763)
Se Jang (5461760)
Jarod Prince (758805)
Subra Kugathasan (758814)
Sampath Prahalad (93360)
Greg Gibson (4110)

June 2018

Table S1. List of genes included in transcriptional risk scores. Table S2. List of differentially ex...

Additional file 2: of Investigation of the influence of high glucose on molecular and genetic responses: an in vitro study using a human intestine model

Tugce Boztepe (5156204)
Sukru Gulec (420155)

April 2018

Table S2. The list of the significantly downregulated genes under high glucose treatment condition (...

Additional file 2: of Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis

Madhusudan Grover (4607674)
Simon Gibbons (391868)
Asha Nair (447747)
Cheryl Bernard (5612189)
Adeel Zubair (4276402)
Seth Eisenman (5612198)
Laura Wilson (299884)
Laura Miriel (5612204)
Pankaj Pasricha (5612207)
Henry Parkman (5612210)
Irene Sarosiek (4607656)
Richard McCallum (4254079)
Kenneth Koch (5537546)
Thomas Abell (3494384)
William Snape (5612219)
Braden Kuo (732955)
Robert Shulman (3548558)
Travis McKenzie (5612222)
Todd Kellogg (5612225)
Michael Kendrick (5612228)
James Tonascia (665058)
Frank Hamilton (5100503)
Gianrico Farrugia (467593)

August 2018

Table S2. Differentially expressed genes in diabetic gastroparesis and diabetic controls. (XLSX 93 k...

Additional file 4: of Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis

Madhusudan Grover (4607674)
Simon Gibbons (391868)
Asha Nair (447747)
Cheryl Bernard (5612189)
Adeel Zubair (4276402)
Seth Eisenman (5612198)
Laura Wilson (299884)
Laura Miriel (5612204)
Pankaj Pasricha (5612207)
Henry Parkman (5612210)
Irene Sarosiek (4607656)
Richard McCallum (4254079)
Kenneth Koch (5537546)
Thomas Abell (3494384)
William Snape (5612219)
Braden Kuo (732955)
Robert Shulman (3548558)
Travis McKenzie (5612222)
Todd Kellogg (5612225)
Michael Kendrick (5612228)
James Tonascia (665058)
Frank Hamilton (5100503)
Gianrico Farrugia (467593)

August 2018

Table S4. Differentially expressed genes in idiopathic gastroparesis and idiopathic controls. (XLSX ...

Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis

Madhusudan Grover
Simon J. Gibbons
Asha A. Nair
Cheryl E. Bernard
Adeel S. Zubair
Seth T. Eisenman
Laura A. Wilson
Laura Miriel
Pankaj J. Pasricha
Henry P. Parkman
Irene Sarosiek
Richard W. McCallum
Kenneth L. Koch
Thomas L. Abell
William J. Snape
Braden Kuo
Robert J. Shulman
Travis J. McKenzie
Todd A. Kellogg
Michael L. Kendrick
James Tonascia
Frank A. Hamilton
Gianrico Farrugia
the NIDDK Gastroparesis Clinical Research Consortium (GpCRC)

August 2018

Abstract Background Cellular changes described in human gastroparesis have revealed a role for immun...

Additional file 1: of Investigation of coordination and order in transcription regulation of innate and adaptive immunity genes in type 1 diabetes

Shouguo Gao (136403)
Nathaniel Wolanyk (3705835)
Ye Chen (241426)
Shuang Jia (21248)
Martin Hessner (261518)
Xujing Wang (21247)

January 2017

Table S1. Innate & adaptive immunity genes. Table S2. Activated protein complexes. Table S3. GSEA re...

Additional file 1 of Gene expression analysis reveals diabetes-related gene signatures

M. I. Farrim (17930661)
A. Gomes (17930664)
D. Milenkovic (17930667)
R. Menezes (4276666)

February 2024

Additional file 1. List of genes for the differentially expressed genes (DEGs) for each study analys...

Additional file 1: of Impact of blood collection and processing on peripheral blood gene expression profiling in type 1 diabetes

Linda Yip (4377331)
Rebecca Fuhlbrigge (4377334)
Mark Atkinson (165217)
C. Fathman (4377328)

August 2017

Differentially expressed genes in peripheral blood of female vs. male subjects. List of genes that a...

Additional file 5: of Investigation of lipid metabolism dysregulation and the effects on immune microenvironments in pan-cancer using multiple omics data

Yang Hao (155400)
Daixi Li (5830415)
Yong Xu (17491)
Jian Ouyang (179347)
Yongkun Wang (608397)
Yuqi Zhang (286958)
Baoguo Li (143191)
Lu Xie (55571)
Guangrong Qin (594367)

May 2019

The correlation of gene expression and immune cell proportion in key lipidÂ metabolismÂ pathways. (...

Additional file 4 of Epigenetic and transcriptomic alterations in offspring born to women with type 1 diabetes (the EPICOM study)

Sine Knorr (13845960)
Anne Skakkebæk (5949806)
Jesper Just (467951)
Emma B. Johannsen (13138650)
Christian Trolle (437205)
Søren Vang (44472)
Zuzana Lohse (13845963)
Birgitte Bytoft (3628355)
Peter Damm (328004)
Kurt Højlund (92930)
Dorte M. Jensen (13845966)
Claus H. Gravholt (13138665)

September 2022

Additional file 4: Table T3. List of differentially expressed non-coding RNA between type 1 diabetes...

Additional file 2: Table S1. of Type 1 diabetes susceptibility alleles are associated with distinct alterations in the gut microbiota

Jane Mullaney (4861261)
Juliette Stephens (4861264)
Mary-Ellen Costello (703611)
Cai Fong (4861258)
Brooke Geeling (4861255)
Patrick Gavin (3071853)
Casey Wright (3764194)
Timothy Spector (348486)
Matthew Brown (307585)
Emma Hamilton-Williams (4861252)

February 2018

OTU associations with IL-2/Treg pathway risk alleles. Related to Fig.Â 7. (XLSX 67Â kb

Additional file 1: of Hyperglycemia affects global 5-methylcytosine and 5-hydroxymethylcytosine in blood genomic DNA through upregulation of SIRT6 and TETs

Er-Feng Yuan (6590684)
Ying Yang (24175)
Lin Cheng (107461)
Xujing Deng (6590687)
Shao-Min Chen (6590690)
Xin Zhou (54275)
Song-Mei Liu (278770)

April 2019

Figure S1. The comparison of white blood cells (WBC), neutrophil (NEUT), lymphocyte (LYMPH) and mono...

Additional file 5: Table S5. of Whole genome sequence analysis of the TALLYHO/Jng mouse

James Denvir (182804)
Goran Boskovic (182809)
Jun Fan (246573)
Donald Primerano (3411065)
Jacaline Parkman (3411062)
Jung Kim (455846)

November 2016

Variants in orthologs of GWAS-associated and Mendelian Genes. List of orthologous genes to human gen...

Integrative analysis of the transcriptome profiles observed in type 1, type 2 and gestational diabetes mellitus reveals the role of inflammation

Evangelista, A. F.
Collares, C. V.
Xavier, D. J.
Macedo, C.
Manoel-Caetano, F. S.
Rassi, D. M.
Foss-Freitas, M. C.
Foss, M. C.
Sakamoto-Hojo, E. T.
Nguyen, Cong Tu
Puthier, Denis
Passos, G. A.
Donadi, E. A.

May 2014

International audienceType 1 diabetes (T1D) is an autoimmune disease, while type 2 (T2D) and gestati...

Additional file 5 of Epigenetic and transcriptomic alterations in offspring born to women with type 1 diabetes (the EPICOM study)

Sine Knorr (13845960)
Anne Skakkebæk (5949806)
Jesper Just (467951)
Emma B. Johannsen (13138650)
Christian Trolle (437205)
Søren Vang (44472)
Zuzana Lohse (13845963)
Birgitte Bytoft (3628355)
Peter Damm (328004)
Kurt Højlund (92930)
Dorte M. Jensen (13845966)
Claus H. Gravholt (13138665)

September 2022

Additional file 5: Figure F2. Network plots depicting the genes that are involved in the significant...

Additional file 2: of Disease-specific regulation of gene expression in a comparative analysis of juvenile idiopathic arthritis and inflammatory bowel disease

Angela Mo (5461751)
Urko Marigorta (5461757)
Dalia Arafat (390047)
Lai Chan (5461754)
Lori Ponder (5461763)
Se Jang (5461760)
Jarod Prince (758805)
Subra Kugathasan (758814)
Sampath Prahalad (93360)
Greg Gibson (4110)

June 2018

Table S1. List of genes included in transcriptional risk scores. Table S2. List of differentially ex...

Additional file 2: of Investigation of the influence of high glucose on molecular and genetic responses: an in vitro study using a human intestine model

Tugce Boztepe (5156204)
Sukru Gulec (420155)

April 2018

Table S2. The list of the significantly downregulated genes under high glucose treatment condition (...

Additional file 2: of Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis

Madhusudan Grover (4607674)
Simon Gibbons (391868)
Asha Nair (447747)
Cheryl Bernard (5612189)
Adeel Zubair (4276402)
Seth Eisenman (5612198)
Laura Wilson (299884)
Laura Miriel (5612204)
Pankaj Pasricha (5612207)
Henry Parkman (5612210)
Irene Sarosiek (4607656)
Richard McCallum (4254079)
Kenneth Koch (5537546)
Thomas Abell (3494384)
William Snape (5612219)
Braden Kuo (732955)
Robert Shulman (3548558)
Travis McKenzie (5612222)
Todd Kellogg (5612225)
Michael Kendrick (5612228)
James Tonascia (665058)
Frank Hamilton (5100503)
Gianrico Farrugia (467593)

August 2018

Table S2. Differentially expressed genes in diabetic gastroparesis and diabetic controls. (XLSX 93 k...

Additional file 4: of Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis

Madhusudan Grover (4607674)
Simon Gibbons (391868)
Asha Nair (447747)
Cheryl Bernard (5612189)
Adeel Zubair (4276402)
Seth Eisenman (5612198)
Laura Wilson (299884)
Laura Miriel (5612204)
Pankaj Pasricha (5612207)
Henry Parkman (5612210)
Irene Sarosiek (4607656)
Richard McCallum (4254079)
Kenneth Koch (5537546)
Thomas Abell (3494384)
William Snape (5612219)
Braden Kuo (732955)
Robert Shulman (3548558)
Travis McKenzie (5612222)
Todd Kellogg (5612225)
Michael Kendrick (5612228)
James Tonascia (665058)
Frank Hamilton (5100503)
Gianrico Farrugia (467593)

August 2018

Table S4. Differentially expressed genes in idiopathic gastroparesis and idiopathic controls. (XLSX ...

Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis

Madhusudan Grover
Simon J. Gibbons
Asha A. Nair
Cheryl E. Bernard
Adeel S. Zubair
Seth T. Eisenman
Laura A. Wilson
Laura Miriel
Pankaj J. Pasricha
Henry P. Parkman
Irene Sarosiek
Richard W. McCallum
Kenneth L. Koch
Thomas L. Abell
William J. Snape
Braden Kuo
Robert J. Shulman
Travis J. McKenzie
Todd A. Kellogg
Michael L. Kendrick
James Tonascia
Frank A. Hamilton
Gianrico Farrugia
the NIDDK Gastroparesis Clinical Research Consortium (GpCRC)

August 2018

Abstract Background Cellular changes described in human gastroparesis have revealed a role for immun...

Additional file 1: of Investigation of coordination and order in transcription regulation of innate and adaptive immunity genes in type 1 diabetes

Shouguo Gao (136403)
Nathaniel Wolanyk (3705835)
Ye Chen (241426)
Shuang Jia (21248)
Martin Hessner (261518)
Xujing Wang (21247)

January 2017

Table S1. Innate & adaptive immunity genes. Table S2. Activated protein complexes. Table S3. GSEA re...

Additional file 1 of Gene expression analysis reveals diabetes-related gene signatures

M. I. Farrim (17930661)
A. Gomes (17930664)
D. Milenkovic (17930667)
R. Menezes (4276666)

February 2024

Additional file 1. List of genes for the differentially expressed genes (DEGs) for each study analys...

Additional file 1: of Impact of blood collection and processing on peripheral blood gene expression profiling in type 1 diabetes

Linda Yip (4377331)
Rebecca Fuhlbrigge (4377334)
Mark Atkinson (165217)
C. Fathman (4377328)

August 2017

Differentially expressed genes in peripheral blood of female vs. male subjects. List of genes that a...

Additional file 5: of Investigation of lipid metabolism dysregulation and the effects on immune microenvironments in pan-cancer using multiple omics data

Yang Hao (155400)
Daixi Li (5830415)
Yong Xu (17491)
Jian Ouyang (179347)
Yongkun Wang (608397)
Yuqi Zhang (286958)
Baoguo Li (143191)
Lu Xie (55571)
Guangrong Qin (594367)

May 2019

The correlation of gene expression and immune cell proportion in key lipidÂ metabolismÂ pathways. (...

Additional file 4 of Epigenetic and transcriptomic alterations in offspring born to women with type 1 diabetes (the EPICOM study)

Sine Knorr (13845960)
Anne Skakkebæk (5949806)
Jesper Just (467951)
Emma B. Johannsen (13138650)
Christian Trolle (437205)
Søren Vang (44472)
Zuzana Lohse (13845963)
Birgitte Bytoft (3628355)
Peter Damm (328004)
Kurt Højlund (92930)
Dorte M. Jensen (13845966)
Claus H. Gravholt (13138665)

September 2022

Additional file 4: Table T3. List of differentially expressed non-coding RNA between type 1 diabetes...

Additional file 2: Table S1. of Type 1 diabetes susceptibility alleles are associated with distinct alterations in the gut microbiota

Jane Mullaney (4861261)
Juliette Stephens (4861264)
Mary-Ellen Costello (703611)
Cai Fong (4861258)
Brooke Geeling (4861255)
Patrick Gavin (3071853)
Casey Wright (3764194)
Timothy Spector (348486)
Matthew Brown (307585)
Emma Hamilton-Williams (4861252)

February 2018

OTU associations with IL-2/Treg pathway risk alleles. Related to Fig.Â 7. (XLSX 67Â kb

Additional file 1: of Hyperglycemia affects global 5-methylcytosine and 5-hydroxymethylcytosine in blood genomic DNA through upregulation of SIRT6 and TETs

Er-Feng Yuan (6590684)
Ying Yang (24175)
Lin Cheng (107461)
Xujing Deng (6590687)
Shao-Min Chen (6590690)
Xin Zhou (54275)
Song-Mei Liu (278770)

April 2019

Figure S1. The comparison of white blood cells (WBC), neutrophil (NEUT), lymphocyte (LYMPH) and mono...

Additional file 5: Table S5. of Whole genome sequence analysis of the TALLYHO/Jng mouse

James Denvir (182804)
Goran Boskovic (182809)
Jun Fan (246573)
Donald Primerano (3411065)
Jacaline Parkman (3411062)
Jung Kim (455846)

November 2016

Variants in orthologs of GWAS-associated and Mendelian Genes. List of orthologous genes to human gen...

Integrative analysis of the transcriptome profiles observed in type 1, type 2 and gestational diabetes mellitus reveals the role of inflammation

Evangelista, A. F.
Collares, C. V.
Xavier, D. J.
Macedo, C.
Manoel-Caetano, F. S.
Rassi, D. M.
Foss-Freitas, M. C.
Foss, M. C.
Sakamoto-Hojo, E. T.
Nguyen, Cong Tu
Puthier, Denis
Passos, G. A.
Donadi, E. A.

May 2014

International audienceType 1 diabetes (T1D) is an autoimmune disease, while type 2 (T2D) and gestati...

Additional file 5 of Epigenetic and transcriptomic alterations in offspring born to women with type 1 diabetes (the EPICOM study)

Sine Knorr (13845960)
Anne Skakkebæk (5949806)
Jesper Just (467951)
Emma B. Johannsen (13138650)
Christian Trolle (437205)
Søren Vang (44472)
Zuzana Lohse (13845963)
Birgitte Bytoft (3628355)
Peter Damm (328004)
Kurt Højlund (92930)
Dorte M. Jensen (13845966)
Claus H. Gravholt (13138665)

September 2022

Additional file 5: Figure F2. Network plots depicting the genes that are involved in the significant...

Additional file 2: of Disease-specific regulation of gene expression in a comparative analysis of juvenile idiopathic arthritis and inflammatory bowel disease

Angela Mo (5461751)
Urko Marigorta (5461757)
Dalia Arafat (390047)
Lai Chan (5461754)
Lori Ponder (5461763)
Se Jang (5461760)
Jarod Prince (758805)
Subra Kugathasan (758814)
Sampath Prahalad (93360)
Greg Gibson (4110)

June 2018

Table S1. List of genes included in transcriptional risk scores. Table S2. List of differentially ex...

Additional file 2: of Investigation of the influence of high glucose on molecular and genetic responses: an in vitro study using a human intestine model

Tugce Boztepe (5156204)
Sukru Gulec (420155)

April 2018

Table S2. The list of the significantly downregulated genes under high glucose treatment condition (...

Additional file 5: of Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis

Abstract

Extracted data

Additional file 5: of Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis

Abstract

Extracted data

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