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Sequence length distribution from the reference genome (left), and number of sequences annotated with BLAST hits (right).

Ji-Hee Lee (5607869)
Sathishkumar Natarajan (2839601)
Manosh Kumar Biswas (437910)
Kenta Shirasawa (586327)
Sachiko Isobe (621484)
Hoy-Taek Kim (2839595)
Jong-In Park (121860)
Chi-Nam Seong (5607872)
Ill-Sup Nou (121873)

Publication date

August 2018

DOI

10.1371/journal.pone.0201229.g003

Abstract

<p>Sequence length distribution from the reference genome (left), and number of sequences annotated with BLAST hits (right).</p

Extracted data

Related items

BLASTx top-hit sequence distribution of gene annotations.

Patricia Pereiro (164424)
Pablo Balseiro (164432)
Alejandro Romero (164440)
Sonia Dios (164447)
Gabriel Forn-Cuni (164451)
Berta Fuste (164457)
Josep V. Planas (105540)
Sergi Beltran (25221)
Beatriz Novoa (82631)
Antonio Figueras (82634)

May 2012

<p>Y-axis represents the most abundant annotation terms for the contigs obtained in the 454-pyrosequ...

Gene length distribution in the 11 Planctomycetaceae genomes.

Min Guo (228787)
Qian Zhou (125859)
Yizhuang Zhou (442121)
Linfeng Yang (516708)
Tianxiang Liu (516709)
Jinlong Yang (516710)
Yanling Chen (498235)
Longxiang Su (276106)
Jin Xu (31283)
Jing Chen (4762)
Feng Liu (72874)
Jiapeng Chen (419682)
Wenkui Dai (167126)
Peixiang Ni (6478)
Chengxiang Fang (513566)
Ruifu Yang (46412)

January 2014

<p>The values above each bar (in percent) were calculated as the number of genes that are of specifi...

Distribution of the sequence length of the 197 unigenes in the pentastomid nymph cDNA library.

Jing Zhang (23775)
Yujuan Shen (286665)
Zhongying Yuan (350367)
Jianhai Yin (350366)
Wei Zang (380266)
Yuxin Xu (350369)
Weiyuan Lu (350368)
Yanjuan Wang (380267)
Ying Wang (11406)
Jianping Cao (41543)

February 2013

<p>Distribution of the sequence length of the 197 unigenes in the pentastomid nymph cDNA library.</p

Length distribution of unigenes predicted protein coding sequence (CDS) using BLAST.

Hua Yang (120668)
Ting Su (640554)
Wei Yang (109917)
Chunping Yang (691885)
Lin Lu (5759)
Zhangming Chen (4183045)

June 2017

<p>Length distribution of unigenes predicted protein coding sequence (CDS) using BLAST.</p

The number of blast hits from 23 mammalian species for which genomes have been sequenced.

Matthew D. MacManes (132077)
Eileen A. Lacey (132078)

September 2012

<p>The number of blast hits from 23 mammalian species for which genomes have been sequenced.</p

Sequence length distribution of transcripts assembled from Illumina reads.

Yunxia Yang (313826)
Jiteng Wang (553001)
Tao Han (22342)
Tao Liu (10785)
Chunlin Wang (41331)
Jia Xiao (553000)
Changkao Mu (424472)
Ronghua Li (7398)
Fangping Yu (802768)
Huilai Shi (802769)

October 2015

<p>Sequence length distribution of transcripts assembled from Illumina reads.</p

Sequence length distribution of transcripts assembled from Illumina reads.

Jianjian Lv (492154)
Ping Liu (156158)
Baoquan Gao (492155)
Yu Wang (12152)
Zheng Wang (25883)
Ping Chen (89712)
Jian Li (41607)

April 2014

<p>Sequence length distribution of transcripts assembled from Illumina reads.</p

Frequency distribution of the length of the 80 overlapping genes of the dataset.

Angelo Pavesi (446675)
Alberto Vianelli (5873651)
Nicola Chirico (2050864)
Yiming Bao (275198)
Olga Blinkova (5873654)
Robert Belshaw (278263)
Andrew Firth (4516516)
David Karlin (330454)

October 2018

Frequency distribution of the length of the 80 overlapping genes of the dataset.</p

Distribution of the length (in base pairs) of the target sequence among 334 mammal species.

Andreas O. Tillmar (498036)
Barbara Dell'Amico (498037)
Jenny Welander (498038)
Gunilla Holmlund (377685)

December 2013

<p>Distribution of the length (in base pairs) of the target sequence among 334 mammal species.</p

Taxonomic distribution of contaminating sequences in contaminated genomes, based on DIAMOND blastx estimates.

Luc Cornet (4025225)
Loïc Meunier (5558762)
Mick Van Vlierberghe (5558756)
Raphaël R. Léonard (5558771)
Benoit Durieu (5558759)
Yannick Lara (832955)
Agnieszka Misztak (5558777)
Damien Sirjacobs (5558765)
Emmanuelle J. Javaux (5558774)
Hervé Philippe (21475)
Annick Wilmotte (5558768)
Denis Baurain (227489)

July 2018

<p>Taxonomic distribution of contaminating sequences in contaminated genomes, based on DIAMOND blast...

Length distribution of the all-unigenes with Nr annotations.

Jian Zhang (1682)
Penghui Xie (420345)
Martin Lascoux (201001)
Thomas R. Meagher (420346)
Jianquan Liu (200999)

June 2013

<p>More than 80% of the all-unigenes over 500 bp had BLAST hits in the Nr database.</p

Overall statistics of match sizes using consensus sequences from different programs for genome annotation.

Florian Maumus (548161)
Hadi Quesneville (4280)

April 2014

<p>Overall statistics of match sizes using consensus sequences from different programs for genome an...

The percentage distribution of best blast hits of aggregate samples from each major body site run against reference isolate genomes grouped by each major body site.

Victor M. Markowitz (13826)
I-Min A. Chen (283938)
Ken Chu (283940)
Ernest Szeto (13829)
Krishna Palaniappan (13828)
Biju Jacob (317049)
Anna Ratner (317051)
Konstantinos Liolios (49000)
Ioanna Pagani (317054)
Marcel Huntemann (34103)
Konstantinos Mavromatis (13836)
Natalia N. Ivanova (224150)
Nikos C. Kyrpides (13837)

February 2013

<p>The percentage distribution of best blast hits of aggregate samples from each major body site run...

Phylogenetic distribution of metagenome reads according to best BLAST hits IMG database isolate genomes.

Emily B. Hollister (156772)
Andrea K. Forrest (156777)
Heather H. Wilkinson (156780)
Daniel J. Ebbole (156786)
Susannah G. Tringe (43680)
Stephanie A. Malfatti (124718)
Mark T. Holtzapple (156792)
Terry J. Gentry (156799)

June 2012

<p>Phylogenetic distribution of metagenome reads according to best BLAST hits IMG database isolate g...

Distribution of genes of microbiomes grouped taxonomically and by habitat according to their best BLASTp hit to reference genomes.

Victor M. Markowitz (13826)
I-Min A. Chen (283938)
Ken Chu (283940)
Ernest Szeto (13829)
Krishna Palaniappan (13828)
Biju Jacob (317049)
Anna Ratner (317051)
Konstantinos Liolios (49000)
Ioanna Pagani (317054)
Marcel Huntemann (34103)
Konstantinos Mavromatis (13836)
Natalia N. Ivanova (224150)
Nikos C. Kyrpides (13837)

February 2013

<p>Distribution of genes of microbiomes grouped taxonomically and by habitat according to their best...

BLASTx top-hit sequence distribution of gene annotations.

Patricia Pereiro (164424)
Pablo Balseiro (164432)
Alejandro Romero (164440)
Sonia Dios (164447)
Gabriel Forn-Cuni (164451)
Berta Fuste (164457)
Josep V. Planas (105540)
Sergi Beltran (25221)
Beatriz Novoa (82631)
Antonio Figueras (82634)

May 2012

<p>Y-axis represents the most abundant annotation terms for the contigs obtained in the 454-pyrosequ...

Gene length distribution in the 11 Planctomycetaceae genomes.

Min Guo (228787)
Qian Zhou (125859)
Yizhuang Zhou (442121)
Linfeng Yang (516708)
Tianxiang Liu (516709)
Jinlong Yang (516710)
Yanling Chen (498235)
Longxiang Su (276106)
Jin Xu (31283)
Jing Chen (4762)
Feng Liu (72874)
Jiapeng Chen (419682)
Wenkui Dai (167126)
Peixiang Ni (6478)
Chengxiang Fang (513566)
Ruifu Yang (46412)

January 2014

<p>The values above each bar (in percent) were calculated as the number of genes that are of specifi...

Distribution of the sequence length of the 197 unigenes in the pentastomid nymph cDNA library.

Jing Zhang (23775)
Yujuan Shen (286665)
Zhongying Yuan (350367)
Jianhai Yin (350366)
Wei Zang (380266)
Yuxin Xu (350369)
Weiyuan Lu (350368)
Yanjuan Wang (380267)
Ying Wang (11406)
Jianping Cao (41543)

February 2013

<p>Distribution of the sequence length of the 197 unigenes in the pentastomid nymph cDNA library.</p

Length distribution of unigenes predicted protein coding sequence (CDS) using BLAST.

Hua Yang (120668)
Ting Su (640554)
Wei Yang (109917)
Chunping Yang (691885)
Lin Lu (5759)
Zhangming Chen (4183045)

June 2017

<p>Length distribution of unigenes predicted protein coding sequence (CDS) using BLAST.</p

The number of blast hits from 23 mammalian species for which genomes have been sequenced.

Matthew D. MacManes (132077)
Eileen A. Lacey (132078)

September 2012

<p>The number of blast hits from 23 mammalian species for which genomes have been sequenced.</p

Sequence length distribution of transcripts assembled from Illumina reads.

Yunxia Yang (313826)
Jiteng Wang (553001)
Tao Han (22342)
Tao Liu (10785)
Chunlin Wang (41331)
Jia Xiao (553000)
Changkao Mu (424472)
Ronghua Li (7398)
Fangping Yu (802768)
Huilai Shi (802769)

October 2015

<p>Sequence length distribution of transcripts assembled from Illumina reads.</p

Sequence length distribution of transcripts assembled from Illumina reads.

Jianjian Lv (492154)
Ping Liu (156158)
Baoquan Gao (492155)
Yu Wang (12152)
Zheng Wang (25883)
Ping Chen (89712)
Jian Li (41607)

April 2014

<p>Sequence length distribution of transcripts assembled from Illumina reads.</p

Frequency distribution of the length of the 80 overlapping genes of the dataset.

Angelo Pavesi (446675)
Alberto Vianelli (5873651)
Nicola Chirico (2050864)
Yiming Bao (275198)
Olga Blinkova (5873654)
Robert Belshaw (278263)
Andrew Firth (4516516)
David Karlin (330454)

October 2018

Frequency distribution of the length of the 80 overlapping genes of the dataset.</p

Distribution of the length (in base pairs) of the target sequence among 334 mammal species.

Andreas O. Tillmar (498036)
Barbara Dell'Amico (498037)
Jenny Welander (498038)
Gunilla Holmlund (377685)

December 2013

<p>Distribution of the length (in base pairs) of the target sequence among 334 mammal species.</p

Taxonomic distribution of contaminating sequences in contaminated genomes, based on DIAMOND blastx estimates.

Luc Cornet (4025225)
Loïc Meunier (5558762)
Mick Van Vlierberghe (5558756)
Raphaël R. Léonard (5558771)
Benoit Durieu (5558759)
Yannick Lara (832955)
Agnieszka Misztak (5558777)
Damien Sirjacobs (5558765)
Emmanuelle J. Javaux (5558774)
Hervé Philippe (21475)
Annick Wilmotte (5558768)
Denis Baurain (227489)

July 2018

<p>Taxonomic distribution of contaminating sequences in contaminated genomes, based on DIAMOND blast...

Length distribution of the all-unigenes with Nr annotations.

Jian Zhang (1682)
Penghui Xie (420345)
Martin Lascoux (201001)
Thomas R. Meagher (420346)
Jianquan Liu (200999)

June 2013

<p>More than 80% of the all-unigenes over 500 bp had BLAST hits in the Nr database.</p

Overall statistics of match sizes using consensus sequences from different programs for genome annotation.

Florian Maumus (548161)
Hadi Quesneville (4280)

April 2014

<p>Overall statistics of match sizes using consensus sequences from different programs for genome an...

The percentage distribution of best blast hits of aggregate samples from each major body site run against reference isolate genomes grouped by each major body site.

Victor M. Markowitz (13826)
I-Min A. Chen (283938)
Ken Chu (283940)
Ernest Szeto (13829)
Krishna Palaniappan (13828)
Biju Jacob (317049)
Anna Ratner (317051)
Konstantinos Liolios (49000)
Ioanna Pagani (317054)
Marcel Huntemann (34103)
Konstantinos Mavromatis (13836)
Natalia N. Ivanova (224150)
Nikos C. Kyrpides (13837)

February 2013

<p>The percentage distribution of best blast hits of aggregate samples from each major body site run...

Phylogenetic distribution of metagenome reads according to best BLAST hits IMG database isolate genomes.

Emily B. Hollister (156772)
Andrea K. Forrest (156777)
Heather H. Wilkinson (156780)
Daniel J. Ebbole (156786)
Susannah G. Tringe (43680)
Stephanie A. Malfatti (124718)
Mark T. Holtzapple (156792)
Terry J. Gentry (156799)

June 2012

<p>Phylogenetic distribution of metagenome reads according to best BLAST hits IMG database isolate g...

Distribution of genes of microbiomes grouped taxonomically and by habitat according to their best BLASTp hit to reference genomes.

Victor M. Markowitz (13826)
I-Min A. Chen (283938)
Ken Chu (283940)
Ernest Szeto (13829)
Krishna Palaniappan (13828)
Biju Jacob (317049)
Anna Ratner (317051)
Konstantinos Liolios (49000)
Ioanna Pagani (317054)
Marcel Huntemann (34103)
Konstantinos Mavromatis (13836)
Natalia N. Ivanova (224150)
Nikos C. Kyrpides (13837)

February 2013

<p>Distribution of genes of microbiomes grouped taxonomically and by habitat according to their best...

BLASTx top-hit sequence distribution of gene annotations.

Patricia Pereiro (164424)
Pablo Balseiro (164432)
Alejandro Romero (164440)
Sonia Dios (164447)
Gabriel Forn-Cuni (164451)
Berta Fuste (164457)
Josep V. Planas (105540)
Sergi Beltran (25221)
Beatriz Novoa (82631)
Antonio Figueras (82634)

May 2012

<p>Y-axis represents the most abundant annotation terms for the contigs obtained in the 454-pyrosequ...

Gene length distribution in the 11 Planctomycetaceae genomes.

Min Guo (228787)
Qian Zhou (125859)
Yizhuang Zhou (442121)
Linfeng Yang (516708)
Tianxiang Liu (516709)
Jinlong Yang (516710)
Yanling Chen (498235)
Longxiang Su (276106)
Jin Xu (31283)
Jing Chen (4762)
Feng Liu (72874)
Jiapeng Chen (419682)
Wenkui Dai (167126)
Peixiang Ni (6478)
Chengxiang Fang (513566)
Ruifu Yang (46412)

January 2014

<p>The values above each bar (in percent) were calculated as the number of genes that are of specifi...

Distribution of the sequence length of the 197 unigenes in the pentastomid nymph cDNA library.

Jing Zhang (23775)
Yujuan Shen (286665)
Zhongying Yuan (350367)
Jianhai Yin (350366)
Wei Zang (380266)
Yuxin Xu (350369)
Weiyuan Lu (350368)
Yanjuan Wang (380267)
Ying Wang (11406)
Jianping Cao (41543)

February 2013

<p>Distribution of the sequence length of the 197 unigenes in the pentastomid nymph cDNA library.</p