Additional file 1: of Skeletal muscle in aged mice reveals extensive transformation of muscle gene expression

Additional file 1: of Klotho expression is a prerequisite for proper muscle stem cell function and regeneration of skeletal muscle

Hellen Ahrens (5482466)
Judith Huettemeister (5482469)
Manuel Schmidt (12990)
Christoph Kaether (3539447)
Julia von Maltzahn (313864)

July 2018

Figure S1. ΔKlotho mice display signs of sarcopenia. (A) Immunofluorescence of cross-sections of TA ...

Additional file 4: Table S2. of Transcriptomic profiles of aging in naïve and memory CD4+ cells from mice

Jackson Taylor (4165219)
Lindsay Reynolds (3561941)
Li Hou (460220)
Kurt Lohman (110218)
Wei Cui (92129)
Stephen Kritchevsky (3934919)
Charles McCall (3561944)
Yongmei Liu (104713)

June 2017

Cis-regulatory analysis of expanded gene list (FDR ≤0.1) by i-cisTarget. Table shows transcription f...

Additional file 3: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

John Cole (392281)
Neil Robertson (25148)
Mohammed Rather (3874708)
John Thomson (233402)
Tony McBryan (3414077)
Duncan Sproul (3186)
Tina Wang (213038)
Claire Brock (3874699)
William Clark (775696)
Trey Ideker (10055)
Richard Meehan (3874705)
Richard Miller (3874702)
Holly Brown-Borg (3874486)
Peter Adams (3414071)

March 2017

Supplementary statistical data. The results and description of statistical methods used in each figu...

Additional file 3: Table S1. of Transcriptomic profiles of aging in naïve and memory CD4+ cells from mice

Jackson Taylor (4165219)
Lindsay Reynolds (3561941)
Li Hou (460220)
Kurt Lohman (110218)
Wei Cui (92129)
Stephen Kritchevsky (3934919)
Charles McCall (3561944)
Yongmei Liu (104713)

June 2017

DAVID results from expanded gene list (FDR ≤0.1). Lists of genes differentially expressed between yo...

Additional file 2: of Transcriptomic profiles of aging in naïve and memory CD4+ cells from mice

Jackson Taylor (4165219)
Lindsay Reynolds (3561941)
Li Hou (460220)
Kurt Lohman (110218)
Wei Cui (92129)
Stephen Kritchevsky (3934919)
Charles McCall (3561944)
Yongmei Liu (104713)

June 2017

Genes differentially expressed in young and old, memory and naïve CD4+ T cells. list of gene symbols...

Additional file 2: Figure S2. of Voluntary resistance wheel exercise from mid-life prevents sarcopenia and increases markers of mitochondrial function and autophagy in muscles of old male and female C57BL/6J mice

Zoe White (3506846)
Jessica Terrill (3506855)
Robert White (31891)
Christopher McMahon (3506849)
Phillip Sheard (3506840)
Miranda Grounds (3506843)
Tea Shavlakadze (3506852)

December 2016

Gadd45α (A), Runx1 (B), Chrnd (C), Chrng (D), Musk (E), and Myog (F) mRNA in the quadriceps muscles ...

Additional file 2: of Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment

Tina Wang (213038)
Brian Tsui (3874495)
Jason Kreisberg (3874492)
Neil Robertson (25148)
Andrew Gross (3874489)
Michael Yu (2205013)
Hannah Carter (276508)
Holly Brown-Borg (3874486)
Peter Adams (3414071)
Trey Ideker (10055)

March 2017

Descriptions of sequencing data used to construct a mouse epigenetic-aging model. Tables describing ...

Additional file 1: Figure S1. of Voluntary resistance wheel exercise from mid-life prevents sarcopenia and increases markers of mitochondrial function and autophagy in muscles of old male and female C57BL/6J mice

Zoe White (3506846)
Jessica Terrill (3506855)
Robert White (31891)
Christopher McMahon (3506849)
Phillip Sheard (3506840)
Miranda Grounds (3506843)
Tea Shavlakadze (3506852)

December 2016

Murf1 (A) and Atrogin-1 (B) mRNA in quadriceps muscles of 15-month SED, 23-month SED, and 23-month R...

Skeletal muscle in aged mice reveals extensive transformation of muscle gene expression

I-Hsuan Lin
Junn-Liang Chang
Kate Hua
Wan-Chen Huang
Ming-Ta Hsu
Yi-Fan Chen

August 2018

Abstract Background Aging leads to decreased skeletal muscle function in mammals and is associated w...

Additional file 1 of Transcriptomic profiles of muscular dystrophy with myositis (mdm) in extensor digitorum longus, psoas, and soleus muscles from mice

Pabodha Hettige (9666141)
Uzma Tahir (9666144)
Kiisa C. Nishikawa (9666147)
Matthew J. Gage (13816535)

September 2022

Additional file 1: Figure S1. Overview of gene ontologies associated with a) up- and b) down-regulat...

Additional file 2: Table S2. of Pathways of aging: comparative analysis of gene signatures in replicative senescence and stress induced premature senescence

Kamil Kural (3606617)
Neetu Tandon (3606620)
Mikhail Skoblov (3566675)
Olga Kel-Margoulis (14137)
Ancha Baranova (207327)

December 2016

Transcription Factor Binding Sites within upstream regions of genes down-regulated in both types of ...

AGEMAP: A gene expression database for aging in mice

Zahn, JM
Poosala, S
Owen, AB
Ingram, DK
Lustig, A
Carter, A
Weeraratna, AT
Taub, DD
Gorospe, M
Mazan-Mamczarz, K
Lakatta, EG
Boheler, KR
Xu, X
Mattson, MP
Falco, G
Ko, MSH
Schlessinger, D
Firman, J
Kummerfeld, SK
Wood III, WH
Zonderman, AB
Kim, SK
Becker, KG

January 2007

We present the AGEMAP (Atlas of Gene Expression in Mouse Aging Project) gene expression database, wh...

Additional file 4: Table S4. of Comprehensive transcriptional landscape of aging mouse liver

Ryan White (513000)
Brandon Milholland (455326)
Sheila MacRae (3499064)
Mingyan Lin (139065)
Deyou Zheng (7943)
Jan Vijg (31744)

November 2015

List of top GO terms from upregulated differentially expressed genes used to make Fig.Â 3a. (XLSX 19...

Additional file 1: of Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment

Tina Wang (213038)
Brian Tsui (3874495)
Jason Kreisberg (3874492)
Neil Robertson (25148)
Andrew Gross (3874489)
Michael Yu (2205013)
Hannah Carter (276508)
Holly Brown-Borg (3874486)
Peter Adams (3414071)
Trey Ideker (10055)

March 2017

Supplementary Figures S1âS3. Supplementary figures accompanying main text and legends. (PDF 1263 k...

Additional file 3: Table S3. of Comprehensive transcriptional landscape of aging mouse liver

Ryan White (513000)
Brandon Milholland (455326)
Sheila MacRae (3499064)
Mingyan Lin (139065)
Deyou Zheng (7943)
Jan Vijg (31744)

November 2015

List of top differentially expressed isoforms between young and old livers. (XLSX 73 kb

Additional file 1: of Klotho expression is a prerequisite for proper muscle stem cell function and regeneration of skeletal muscle

Hellen Ahrens (5482466)
Judith Huettemeister (5482469)
Manuel Schmidt (12990)
Christoph Kaether (3539447)
Julia von Maltzahn (313864)

July 2018

Figure S1. ΔKlotho mice display signs of sarcopenia. (A) Immunofluorescence of cross-sections of TA ...

Additional file 4: Table S2. of Transcriptomic profiles of aging in naïve and memory CD4+ cells from mice

Jackson Taylor (4165219)
Lindsay Reynolds (3561941)
Li Hou (460220)
Kurt Lohman (110218)
Wei Cui (92129)
Stephen Kritchevsky (3934919)
Charles McCall (3561944)
Yongmei Liu (104713)

June 2017

Cis-regulatory analysis of expanded gene list (FDR ≤0.1) by i-cisTarget. Table shows transcription f...

Additional file 3: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

John Cole (392281)
Neil Robertson (25148)
Mohammed Rather (3874708)
John Thomson (233402)
Tony McBryan (3414077)
Duncan Sproul (3186)
Tina Wang (213038)
Claire Brock (3874699)
William Clark (775696)
Trey Ideker (10055)
Richard Meehan (3874705)
Richard Miller (3874702)
Holly Brown-Borg (3874486)
Peter Adams (3414071)

March 2017

Supplementary statistical data. The results and description of statistical methods used in each figu...

Additional file 3: Table S1. of Transcriptomic profiles of aging in naïve and memory CD4+ cells from mice

Jackson Taylor (4165219)
Lindsay Reynolds (3561941)
Li Hou (460220)
Kurt Lohman (110218)
Wei Cui (92129)
Stephen Kritchevsky (3934919)
Charles McCall (3561944)
Yongmei Liu (104713)

June 2017

DAVID results from expanded gene list (FDR ≤0.1). Lists of genes differentially expressed between yo...

Additional file 2: of Transcriptomic profiles of aging in naïve and memory CD4+ cells from mice

Jackson Taylor (4165219)
Lindsay Reynolds (3561941)
Li Hou (460220)
Kurt Lohman (110218)
Wei Cui (92129)
Stephen Kritchevsky (3934919)
Charles McCall (3561944)
Yongmei Liu (104713)

June 2017

Genes differentially expressed in young and old, memory and naïve CD4+ T cells. list of gene symbols...

Additional file 2: Figure S2. of Voluntary resistance wheel exercise from mid-life prevents sarcopenia and increases markers of mitochondrial function and autophagy in muscles of old male and female C57BL/6J mice

Zoe White (3506846)
Jessica Terrill (3506855)
Robert White (31891)
Christopher McMahon (3506849)
Phillip Sheard (3506840)
Miranda Grounds (3506843)
Tea Shavlakadze (3506852)

December 2016

Gadd45α (A), Runx1 (B), Chrnd (C), Chrng (D), Musk (E), and Myog (F) mRNA in the quadriceps muscles ...

Additional file 2: of Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment

Tina Wang (213038)
Brian Tsui (3874495)
Jason Kreisberg (3874492)
Neil Robertson (25148)
Andrew Gross (3874489)
Michael Yu (2205013)
Hannah Carter (276508)
Holly Brown-Borg (3874486)
Peter Adams (3414071)
Trey Ideker (10055)

March 2017

Descriptions of sequencing data used to construct a mouse epigenetic-aging model. Tables describing ...

Additional file 1: Figure S1. of Voluntary resistance wheel exercise from mid-life prevents sarcopenia and increases markers of mitochondrial function and autophagy in muscles of old male and female C57BL/6J mice

Zoe White (3506846)
Jessica Terrill (3506855)
Robert White (31891)
Christopher McMahon (3506849)
Phillip Sheard (3506840)
Miranda Grounds (3506843)
Tea Shavlakadze (3506852)

December 2016

Murf1 (A) and Atrogin-1 (B) mRNA in quadriceps muscles of 15-month SED, 23-month SED, and 23-month R...

Skeletal muscle in aged mice reveals extensive transformation of muscle gene expression

I-Hsuan Lin
Junn-Liang Chang
Kate Hua
Wan-Chen Huang
Ming-Ta Hsu
Yi-Fan Chen

August 2018

Abstract Background Aging leads to decreased skeletal muscle function in mammals and is associated w...

Additional file 1 of Transcriptomic profiles of muscular dystrophy with myositis (mdm) in extensor digitorum longus, psoas, and soleus muscles from mice

Pabodha Hettige (9666141)
Uzma Tahir (9666144)
Kiisa C. Nishikawa (9666147)
Matthew J. Gage (13816535)

September 2022

Additional file 1: Figure S1. Overview of gene ontologies associated with a) up- and b) down-regulat...

Additional file 2: Table S2. of Pathways of aging: comparative analysis of gene signatures in replicative senescence and stress induced premature senescence

Kamil Kural (3606617)
Neetu Tandon (3606620)
Mikhail Skoblov (3566675)
Olga Kel-Margoulis (14137)
Ancha Baranova (207327)

December 2016

Transcription Factor Binding Sites within upstream regions of genes down-regulated in both types of ...

AGEMAP: A gene expression database for aging in mice

Zahn, JM
Poosala, S
Owen, AB
Ingram, DK
Lustig, A
Carter, A
Weeraratna, AT
Taub, DD
Gorospe, M
Mazan-Mamczarz, K
Lakatta, EG
Boheler, KR
Xu, X
Mattson, MP
Falco, G
Ko, MSH
Schlessinger, D
Firman, J
Kummerfeld, SK
Wood III, WH
Zonderman, AB
Kim, SK
Becker, KG

January 2007

We present the AGEMAP (Atlas of Gene Expression in Mouse Aging Project) gene expression database, wh...

Additional file 4: Table S4. of Comprehensive transcriptional landscape of aging mouse liver

Ryan White (513000)
Brandon Milholland (455326)
Sheila MacRae (3499064)
Mingyan Lin (139065)
Deyou Zheng (7943)
Jan Vijg (31744)

November 2015

List of top GO terms from upregulated differentially expressed genes used to make Fig.Â 3a. (XLSX 19...

Additional file 1: of Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment

Tina Wang (213038)
Brian Tsui (3874495)
Jason Kreisberg (3874492)
Neil Robertson (25148)
Andrew Gross (3874489)
Michael Yu (2205013)
Hannah Carter (276508)
Holly Brown-Borg (3874486)
Peter Adams (3414071)
Trey Ideker (10055)

March 2017

Supplementary Figures S1âS3. Supplementary figures accompanying main text and legends. (PDF 1263 k...

Additional file 3: Table S3. of Comprehensive transcriptional landscape of aging mouse liver

Ryan White (513000)
Brandon Milholland (455326)
Sheila MacRae (3499064)
Mingyan Lin (139065)
Deyou Zheng (7943)
Jan Vijg (31744)

November 2015

List of top differentially expressed isoforms between young and old livers. (XLSX 73 kb

Additional file 1: of Klotho expression is a prerequisite for proper muscle stem cell function and regeneration of skeletal muscle

Hellen Ahrens (5482466)
Judith Huettemeister (5482469)
Manuel Schmidt (12990)
Christoph Kaether (3539447)
Julia von Maltzahn (313864)

July 2018

Figure S1. ΔKlotho mice display signs of sarcopenia. (A) Immunofluorescence of cross-sections of TA ...

Additional file 4: Table S2. of Transcriptomic profiles of aging in naïve and memory CD4+ cells from mice

Jackson Taylor (4165219)
Lindsay Reynolds (3561941)
Li Hou (460220)
Kurt Lohman (110218)
Wei Cui (92129)
Stephen Kritchevsky (3934919)
Charles McCall (3561944)
Yongmei Liu (104713)

June 2017

Cis-regulatory analysis of expanded gene list (FDR ≤0.1) by i-cisTarget. Table shows transcription f...

Additional file 3: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

John Cole (392281)
Neil Robertson (25148)
Mohammed Rather (3874708)
John Thomson (233402)
Tony McBryan (3414077)
Duncan Sproul (3186)
Tina Wang (213038)
Claire Brock (3874699)
William Clark (775696)
Trey Ideker (10055)
Richard Meehan (3874705)
Richard Miller (3874702)
Holly Brown-Borg (3874486)
Peter Adams (3414071)

March 2017

Supplementary statistical data. The results and description of statistical methods used in each figu...

Additional file 1: of Skeletal muscle in aged mice reveals extensive transformation of muscle gene expression

Abstract

Extracted data

Additional file 1: of Skeletal muscle in aged mice reveals extensive transformation of muscle gene expression

Abstract

Extracted data

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