The structure of DNA in the nucleosome core particle is studied using an elastic model that incorporates anisotropy in the bending energetics and twist-bend coupling. Using the experimentally determined structure of nucleosomal DNA [T.J. Richmond and C.A. Davey, Nature (London)NATUAS0028-0836 423, 145 (2003)10.1038/nature01595], it is shown that elastic correlations exist between twist, roll, tilt, and stretching of DNA, as well as the distance between phosphate groups. The twist-bend coupling term is shown to be able to capture these correlations to a large extent, and a fit to the experimental data yields a new estimate of G=25nm for the value of the twist-bend coupling constant. © 2005 The American Physical Society
A systematic analysis of B-DNA elasticity cross-terms was performed using molecular dynamics simulat...
Recent single-molecule measurements have revealed the DNA allostery in protein/DNA binding. MD simul...
AbstractA theoretical model for predicting nucleosome thermodynamic stability in terms of DNA sequen...
The structure of DNA in the nucleosome core particle is studied using an elastic model that incorpor...
The structure of DNA in the nucleosome core particle is studied using an elastic model that incorpor...
The mechanics of DNA structural fluctuations at room temperature is generally modelled with a simple...
Although mechanical properties of DNA are well characterized at the kilobase-pair range, a number of...
The physical configuration of double-stranded DNA plays a significant role in the protection and exp...
Active biological processes like transcription, replication, recombination, DNA repair, and DNA pack...
International audienceActive biological processes like transcription, replication, recombination, DN...
We investigate a chain consisting of two coupled worm-like chains withconstant distance between the ...
SummaryThe sequence-dependent mechanics of DNA-histone binding are essential for nucleosome position...
In cells, DNA is constantly twisted, bent and stretched by numerous proteins mediating genome transa...
A systematic analysis of B-DNA elasticity cross-terms was performed using molecular dynamics simulat...
AbstractMolecular dynamics simulations of the nucleosome core particle and its isolated DNA free in ...
A systematic analysis of B-DNA elasticity cross-terms was performed using molecular dynamics simulat...
Recent single-molecule measurements have revealed the DNA allostery in protein/DNA binding. MD simul...
AbstractA theoretical model for predicting nucleosome thermodynamic stability in terms of DNA sequen...
The structure of DNA in the nucleosome core particle is studied using an elastic model that incorpor...
The structure of DNA in the nucleosome core particle is studied using an elastic model that incorpor...
The mechanics of DNA structural fluctuations at room temperature is generally modelled with a simple...
Although mechanical properties of DNA are well characterized at the kilobase-pair range, a number of...
The physical configuration of double-stranded DNA plays a significant role in the protection and exp...
Active biological processes like transcription, replication, recombination, DNA repair, and DNA pack...
International audienceActive biological processes like transcription, replication, recombination, DN...
We investigate a chain consisting of two coupled worm-like chains withconstant distance between the ...
SummaryThe sequence-dependent mechanics of DNA-histone binding are essential for nucleosome position...
In cells, DNA is constantly twisted, bent and stretched by numerous proteins mediating genome transa...
A systematic analysis of B-DNA elasticity cross-terms was performed using molecular dynamics simulat...
AbstractMolecular dynamics simulations of the nucleosome core particle and its isolated DNA free in ...
A systematic analysis of B-DNA elasticity cross-terms was performed using molecular dynamics simulat...
Recent single-molecule measurements have revealed the DNA allostery in protein/DNA binding. MD simul...
AbstractA theoretical model for predicting nucleosome thermodynamic stability in terms of DNA sequen...