This thesis deals with the issue of detection of anatomical structures in medical images using convolutional neural networks (CNN). At first there are described methods of machine learning, convolutional neural networks and selected methods for detection using CNN. In this work was created a database of annotated CT images of ten anatomical structures (head, heart, aorta, left and right lung, spine, liver, left and right kidney, spleen). A method for detecting these structures was designed, that contains two approaches of region proposals from image, CNN and postprocessing to obtain the detection result. The designed algorithm was implemented in the Python programming language using the TensorFlow library. Obtained results of validation of ...