We study thermal aggregation and disaggregation processes in complex carrageenan/lysozyme systems with a different linear charge density of the sulphated polysaccharide. To this end, we determine the temperature dependency of the turbidity and the intensity size distribution functions in complex kappa-carrageenan/lysozyme (kCG/lys) and lambda-carrageenan/lysozyme (lCG/lys) systems. We demonstrate that increasing the temperature up to 80 °C in complex kCG/lys systems results in a monotonous decrease of the turbidity and the average sizes of the complex particles. On the contrary, for lCG/lys systems these values considerably increase with temperature. This suggests that disruption of the intermacromolecular hydrogen bonds at high temperature...