Genet Med

PurposeHeterotaxy is a clinically and genetically heterogeneous disorder. We investigated whether screening cases restricted to a classic phenotype would result in the discovery of novel, potentially causal copy-number variants.MethodsWe identified 77 cases of classic heterotaxy from all live births in New York State during 1998\u20132005. DNA extracted from each infant\u2019s newborn dried blood spot was genotyped with a microarray containing 2.5 million single-nucleotide polymorphisms. Copy-number variants were identified with PennCNV and cnvPartition software. Candidates were selected for follow-up if they were absent in unaffected controls, contained 10 or more consecutive probes, and had minimal overlap with variants published in the Database of Genomic Variants.ResultsWe identified 20 rare copy-number variants including a deletion of BMP2, which has been linked to laterality disorders in mice but not previously reported in humans. We also identified a large, terminal deletion of 10q and a microdeletion at 1q23.1 involving the MNDA gene; both are rare variants suspected to be associated with heterotaxy.ConclusionOur findings implicate rare copy-number variants in classic heterotaxy and highlight several candidate gene regions for further investigation. We also demonstrate the efficacy of copy-number variant genotyping in blood spots using microarrays.U01 DD000492/DD/NCBDD CDC HHS/United StatesN01-DK-73431/DK/NIDDK NIH HHS/United StatesHHSN275201100001I/PHS HHS/United StatesN01DK73431/DK/WHI NIH HHS/United StatesWellcome Trust/United KingdomHHSN27500005/PHS HHS/United States2018-04-16T00:00:00Z25232849PMC5901701vault:2785