International audienceThe computation of long-range potentials is one of the demanding tasks in Molecular Dynamics. During the last decades, an inventive panoply of methods was developed in order to reduce the CPU time of this task. In this work, we propose a fast method dedicated to the computation of the elec-trostatic potential in adaptively restrained systems. We exploit the fact that, in such systems, only some particles are allowed to move at each timestep. We developed an incremental algorithm derived from a multigrid-based alternative to traditional Fourier-based methods. Our algorithm was implemented inside LAMMPS, a popular molecular dynamics simulation package. We evaluated the method on different systems. We showed that the new ...
International audienceIn this paper, we explore the use of Adaptively Restrained (AR) particles for ...
We are designing and developing the algorithms for molecular dynamics (MD) simulations with large sy...
. We describe results obtained from a new implementation of Hockney's Particle-Particle Particl...
International audienceThe computation of long-range potentials is one of the demanding tasks in Mole...
International audienceAdaptively Restrained Molecular Dynamics (ARMD) is a recently introduced parti...
Particle simulations have become an essential tool in various fields such as physics, astrophysics, ...
An important and computationally demanding part of molecular dynamics simulations is the calculation...
International audienceForce computations are one of the most time consuming part in performing Molec...
An algorithm for fast calculation of the Coulombic forces and energies of point particles with free ...
Within molecular dynamics simulations of protein–solvent systems the exact evaluation of long-range ...
A significant and computationally most demanding part of molecular dynamics simulations is the calcu...
Multipole-based algorithms allow for reduction in the effort required to solve the N - body problem ...
The appropriate treatment of long-range Coulombic forces is an area of great interest in the biomole...
Computer simulations of complex particle systems play an increasingly important role across a broad ...
International audienceInteraction potentials used in particle simulations are typically written as a...
International audienceIn this paper, we explore the use of Adaptively Restrained (AR) particles for ...
We are designing and developing the algorithms for molecular dynamics (MD) simulations with large sy...
. We describe results obtained from a new implementation of Hockney's Particle-Particle Particl...
International audienceThe computation of long-range potentials is one of the demanding tasks in Mole...
International audienceAdaptively Restrained Molecular Dynamics (ARMD) is a recently introduced parti...
Particle simulations have become an essential tool in various fields such as physics, astrophysics, ...
An important and computationally demanding part of molecular dynamics simulations is the calculation...
International audienceForce computations are one of the most time consuming part in performing Molec...
An algorithm for fast calculation of the Coulombic forces and energies of point particles with free ...
Within molecular dynamics simulations of protein–solvent systems the exact evaluation of long-range ...
A significant and computationally most demanding part of molecular dynamics simulations is the calcu...
Multipole-based algorithms allow for reduction in the effort required to solve the N - body problem ...
The appropriate treatment of long-range Coulombic forces is an area of great interest in the biomole...
Computer simulations of complex particle systems play an increasingly important role across a broad ...
International audienceInteraction potentials used in particle simulations are typically written as a...
International audienceIn this paper, we explore the use of Adaptively Restrained (AR) particles for ...
We are designing and developing the algorithms for molecular dynamics (MD) simulations with large sy...
. We describe results obtained from a new implementation of Hockney's Particle-Particle Particl...