Additional file 1: of Analysis of hepatic transcriptome demonstrates altered lipid metabolism following Lactobacillus johnsonii BS15 prevention in chickens with subclinical necrotic enteritis

Additional file 3: Table S3. of Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens

Hong Li (20183)
Taian Wang (3580109)
Chunlin Xu (1278819)
Dandan Wang (286632)
Junxiao Ren (3580115)
Yanmin Li (272090)
Yadong Tian (3580121)
Yanbin Wang (1758400)
Yuping Jiao (3580118)
Xiangtao Kang (3580112)
Xiaojun Liu (58952)

October 2015

SDE hepatic genes between two different physiological stages (juvenile and egg laying hens). (XLSX 1...

Additional file 5: Table S5. of Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens

Hong Li (20183)
Taian Wang (3580109)
Chunlin Xu (1278819)
Dandan Wang (286632)
Junxiao Ren (3580115)
Yanmin Li (272090)
Yadong Tian (3580121)
Yanbin Wang (1758400)
Yuping Jiao (3580118)
Xiangtao Kang (3580112)
Xiaojun Liu (58952)

October 2015

Gene ontology annotation clusters of SDE hepatic genes between juvenile and egg laying hens. (XLSX 1...

Additional file 1: Table S1. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The composition of broiler chickens starter and grower diets (g/kg). (DOC 43Â kb

Additional file 3: of Analysis of hepatic transcriptome demonstrates altered lipid metabolism following Lactobacillus johnsonii BS15 prevention in chickens with subclinical necrotic enteritis

Xiaodan Qing (5126744)
Dong Zeng (486318)
Hesong Wang (737012)
Xueqin Ni (3537647)
Jing Lai (43123)
Lei Liu (5074)
Abdul Khalique (5029442)
Kangcheng Pan (3537644)
Bo Jing (1587331)

April 2018

Table S3. Details for regulatory genes and pathways related to lipid metabolism in comparison of con...

Additional file 2: of Analysis of hepatic transcriptome demonstrates altered lipid metabolism following Lactobacillus johnsonii BS15 prevention in chickens with subclinical necrotic enteritis

Xiaodan Qing (5126744)
Dong Zeng (486318)
Hesong Wang (737012)
Xueqin Ni (3537647)
Jing Lai (43123)
Lei Liu (5074)
Abdul Khalique (5029442)
Kangcheng Pan (3537644)
Bo Jing (1587331)

April 2018

Table S2. Details for genes and pathways relevant to lipid metabolism mediating the preventive effec...

Analysis of hepatic transcriptome demonstrates altered lipid metabolism following Lactobacillus johnsonii BS15 prevention in chickens with subclinical necrotic enteritis

Xiaodan Qing
Dong Zeng
Hesong Wang
Xueqin Ni
Jing Lai
Lei Liu
Abdul Khalique
Kangcheng Pan
Bo Jing

April 2018

Abstract Background Subclinical necrotic enteritis (SNE) widely outbreaks in chickens which inflicte...

Additional file 1: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S1. Number of genes expressed and novel transcripts. L and F represent the lean and fat chick...

Additional file 9: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S4. Proportion of clean tag numbers (>â96%). L and F represent the lean and fat chicken lin...

Additional file 10: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S5. Relationship of library size with percentage of genes identified. (DOC 64Â kb

Additional file 6: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S5. DEGs identified in liver of E21 embryos between the fat and lean lines. (XLSX 31Â kb

Additional file 3: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S2. DEGs identified in liver of E12 embryos between the fat and lean lines. (XLSX 27Â kb

Additional file 5: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S4. DEGs identified in liver of E17 embryos between the fat and lean lines. (XLSX 138Â kb

Additional file 4: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S3. DEGs identified in liver of E14 embryos between the fat and lean lines. (XLSX 125Â kb

Additional file 2: Table S2. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The primer sequences used for qPCR analysis of the differentially expressed proteins of the liver of...

Additional file 7: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S2. Protein profiling on liver tissues of chicken embryos. A total of 15 gels were assayed, a...

Additional file 3: Table S3. of Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens

Hong Li (20183)
Taian Wang (3580109)
Chunlin Xu (1278819)
Dandan Wang (286632)
Junxiao Ren (3580115)
Yanmin Li (272090)
Yadong Tian (3580121)
Yanbin Wang (1758400)
Yuping Jiao (3580118)
Xiangtao Kang (3580112)
Xiaojun Liu (58952)

October 2015

SDE hepatic genes between two different physiological stages (juvenile and egg laying hens). (XLSX 1...

Additional file 5: Table S5. of Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens

Hong Li (20183)
Taian Wang (3580109)
Chunlin Xu (1278819)
Dandan Wang (286632)
Junxiao Ren (3580115)
Yanmin Li (272090)
Yadong Tian (3580121)
Yanbin Wang (1758400)
Yuping Jiao (3580118)
Xiangtao Kang (3580112)
Xiaojun Liu (58952)

October 2015

Gene ontology annotation clusters of SDE hepatic genes between juvenile and egg laying hens. (XLSX 1...

Additional file 1: Table S1. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The composition of broiler chickens starter and grower diets (g/kg). (DOC 43Â kb

Additional file 3: of Analysis of hepatic transcriptome demonstrates altered lipid metabolism following Lactobacillus johnsonii BS15 prevention in chickens with subclinical necrotic enteritis

Xiaodan Qing (5126744)
Dong Zeng (486318)
Hesong Wang (737012)
Xueqin Ni (3537647)
Jing Lai (43123)
Lei Liu (5074)
Abdul Khalique (5029442)
Kangcheng Pan (3537644)
Bo Jing (1587331)

April 2018

Table S3. Details for regulatory genes and pathways related to lipid metabolism in comparison of con...

Additional file 2: of Analysis of hepatic transcriptome demonstrates altered lipid metabolism following Lactobacillus johnsonii BS15 prevention in chickens with subclinical necrotic enteritis

Xiaodan Qing (5126744)
Dong Zeng (486318)
Hesong Wang (737012)
Xueqin Ni (3537647)
Jing Lai (43123)
Lei Liu (5074)
Abdul Khalique (5029442)
Kangcheng Pan (3537644)
Bo Jing (1587331)

April 2018

Table S2. Details for genes and pathways relevant to lipid metabolism mediating the preventive effec...

Analysis of hepatic transcriptome demonstrates altered lipid metabolism following Lactobacillus johnsonii BS15 prevention in chickens with subclinical necrotic enteritis

Xiaodan Qing
Dong Zeng
Hesong Wang
Xueqin Ni
Jing Lai
Lei Liu
Abdul Khalique
Kangcheng Pan
Bo Jing

April 2018

Abstract Background Subclinical necrotic enteritis (SNE) widely outbreaks in chickens which inflicte...

Additional file 1: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S1. Number of genes expressed and novel transcripts. L and F represent the lean and fat chick...

Additional file 9: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S4. Proportion of clean tag numbers (>â96%). L and F represent the lean and fat chicken lin...

Additional file 10: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S5. Relationship of library size with percentage of genes identified. (DOC 64Â kb

Additional file 6: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S5. DEGs identified in liver of E21 embryos between the fat and lean lines. (XLSX 31Â kb

Additional file 3: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S2. DEGs identified in liver of E12 embryos between the fat and lean lines. (XLSX 27Â kb

Additional file 5: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S4. DEGs identified in liver of E17 embryos between the fat and lean lines. (XLSX 138Â kb

Additional file 4: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Table S3. DEGs identified in liver of E14 embryos between the fat and lean lines. (XLSX 125Â kb

Additional file 2: Table S2. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The primer sequences used for qPCR analysis of the differentially expressed proteins of the liver of...

Additional file 7: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S2. Protein profiling on liver tissues of chicken embryos. A total of 15 gels were assayed, a...

Additional file 3: Table S3. of Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens

Hong Li (20183)
Taian Wang (3580109)
Chunlin Xu (1278819)
Dandan Wang (286632)
Junxiao Ren (3580115)
Yanmin Li (272090)
Yadong Tian (3580121)
Yanbin Wang (1758400)
Yuping Jiao (3580118)
Xiangtao Kang (3580112)
Xiaojun Liu (58952)

October 2015

SDE hepatic genes between two different physiological stages (juvenile and egg laying hens). (XLSX 1...

Additional file 5: Table S5. of Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens

Hong Li (20183)
Taian Wang (3580109)
Chunlin Xu (1278819)
Dandan Wang (286632)
Junxiao Ren (3580115)
Yanmin Li (272090)
Yadong Tian (3580121)
Yanbin Wang (1758400)
Yuping Jiao (3580118)
Xiangtao Kang (3580112)
Xiaojun Liu (58952)

October 2015

Gene ontology annotation clusters of SDE hepatic genes between juvenile and egg laying hens. (XLSX 1...

Additional file 1: Table S1. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The composition of broiler chickens starter and grower diets (g/kg). (DOC 43Â kb

Additional file 1: of Analysis of hepatic transcriptome demonstrates altered lipid metabolism following Lactobacillus johnsonii BS15 prevention in chickens with subclinical necrotic enteritis

Abstract

Extracted data

Additional file 1: of Analysis of hepatic transcriptome demonstrates altered lipid metabolism following Lactobacillus johnsonii BS15 prevention in chickens with subclinical necrotic enteritis

Abstract

Extracted data

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