<p>The free energetics of water density fluctuations in bulk water, at interfaces, and in hydrophobic confinement inform the hydration of hydrophobic solutes as well as their interactions and assembly. The characterisation of such free energetics is typically performed using enhanced sampling techniques such as umbrella sampling. In umbrella sampling, order parameter distributions obtained from adjacent biased simulations must overlap in order to estimate free energy differences between biased ensembles. Many biased simulations are typically required to ensure such overlap, which exacts a steep computational cost. We recently introduced a sparse sampling method, which circumvents the overlap requirement by using thermodynamic integration to...
The potential utility and limitations of two methods to determine free energy differences from molec...
We compare the performance of two well-established computational algorithms for the calculation of f...
We introduce a new simulation method called Coupled-Perturbed Quantum Umbrella Sampling that extends...
Quantifying density fluctuations in volumes of all shapes and sizes using indirect umbrella sampling...
Equilibrium sampling is at the core of computational thermodynamics, aiding our understanding of var...
The hydrophobic effect, or the tendency for oil and water not to mix, is a fundamental force that st...
ABSTRACT: Solute sampling of explicit bulk-phase aqueous environments in grand canonical (GC) ensemb...
We introduce an alternative method to perform free energy calculations for mixtures at multiple temp...
The present work investigates the effect of interfacial fluctuations (predominantly capillary wave-l...
We have calculated the free energy of solvation for hard sphere solutes, as large as 20 Å in diamete...
ABSTRACT: Accurate prediction of hydration free energies is a key objective of any free energy metho...
Free-energy differences between pairs of end-states can be estimated based on molecular dynamics (MD...
In the past decade there has been considerable interest in nonequilibrium free energy theorems. Thes...
Umbrella sampling is an efficient method for the calculation of free energy changes of a system alon...
The possibility of estimating equilibrium free-energy profiles from multiple non-equilibrium simulat...
The potential utility and limitations of two methods to determine free energy differences from molec...
We compare the performance of two well-established computational algorithms for the calculation of f...
We introduce a new simulation method called Coupled-Perturbed Quantum Umbrella Sampling that extends...
Quantifying density fluctuations in volumes of all shapes and sizes using indirect umbrella sampling...
Equilibrium sampling is at the core of computational thermodynamics, aiding our understanding of var...
The hydrophobic effect, or the tendency for oil and water not to mix, is a fundamental force that st...
ABSTRACT: Solute sampling of explicit bulk-phase aqueous environments in grand canonical (GC) ensemb...
We introduce an alternative method to perform free energy calculations for mixtures at multiple temp...
The present work investigates the effect of interfacial fluctuations (predominantly capillary wave-l...
We have calculated the free energy of solvation for hard sphere solutes, as large as 20 Å in diamete...
ABSTRACT: Accurate prediction of hydration free energies is a key objective of any free energy metho...
Free-energy differences between pairs of end-states can be estimated based on molecular dynamics (MD...
In the past decade there has been considerable interest in nonequilibrium free energy theorems. Thes...
Umbrella sampling is an efficient method for the calculation of free energy changes of a system alon...
The possibility of estimating equilibrium free-energy profiles from multiple non-equilibrium simulat...
The potential utility and limitations of two methods to determine free energy differences from molec...
We compare the performance of two well-established computational algorithms for the calculation of f...
We introduce a new simulation method called Coupled-Perturbed Quantum Umbrella Sampling that extends...