Additional file 3: of Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls

Additional file 7: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

Normalized gene expression level and statistical results of differentially expressed genes analysis ...

Additional file 12: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

Functional enrichment and significant category (BH-adj <10%) are shown from differentially expressed...

Additional file 3: of Impact of energy restriction during late gestation on the muscle and blood transcriptome of beef calves after preconditioning

Leticia Sanglard (5791802)
Moysés Nascimento (4252765)
Philipe Moriel (5791805)
Jeffrey Sommer (5791808)
Melissa Ashwell (5791811)
Matthew Poore (5791814)
Márcio Duarte (5791817)
Nick Serão (4589707)

September 2018

Gene set enrichment analysis output for blood. Excel file with term ontologies from the enrichment a...

Additional file 1: of Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls

Anne-Marie English (5141153)
Sineád Waters (5141159)
Paul Cormican (147333)
Colin Byrne (2431744)
Seán Fair (5141156)
David Kenny (3505283)

April 2018

Molecular and cellular function of differentially expressed genes of the subcutaneous adipose tissue...

Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls

English, Anne-Marie
Waters, Sinead M.
Cormican, Paul
Byrne, Colin J
Fair, Seán
Kenny, David A.

July 2018

The dataset generated during and analysed in the current study are available in the NCBI’s Gene Expr...

Additional file 3: of Residual feed intake phenotype and gender affect the expression of key genes of the lipogenesis pathway in subcutaneous adipose tissue of beef cattle

Clare McKenna (5927276)
Richard Porter (291839)
Kate Keogh (777352)
Sinead Waters (3505286)
Mark McGee (3994640)
David Kenny (3505283)

September 2018

Correlogram highlighting the correlation between all adipose tissue candidate genes from adipose tis...

Additional file 3: Table S1. of Gene expression profile of intramuscular muscle in Nellore cattle with extreme values of fatty acid

Chiaia, Hermenegildo L.J.
Gordo, Daniel M.
Feitosa, Fabieli L.B.
Peripolli, Elisa
Silva, Rafael M.de O
de Oliveira, Henrique N.
Coutinho, Luiz L.
Pereira, Angélica S.C.
Ferrinho, Adrielle M.
Baldi, Fernando
de Lemos, Marcos Vinicius A.
Stafuzza, Nedenia B.
Espigolan, Rafael
Berton, Mariana P.
Cesar, Aline S.M.
Tonussi, Rafael L.
Gimenez, Daniela F.J.
Mueller, Lenise F.
de Albuquerque, Lucia G.
Aboujaoude, Carolyn
Utembergue, Bruno L.
Fonseca, Larissa F.S.
Olivieri, Bianca F.
Duckett, Susan

January 2016

Differentially expressed genes for C14:0. Table S2. Differentially expressed genes for C16:0. Table ...

Additional file 6: of Genome-wide association and genomic prediction of breeding values for fatty acid composition in subcutaneous adipose and longissimus lumborum muscle of beef cattle

Liuhong Chen (598284)
Chinyere Ekine-Dzivenu (3530639)
Michael Vinsky (3530636)
John Basarab (3530648)
Jennifer Aalhus (3530642)
Mike Dugan (3530645)
Carolyn Fitzsimmons (77552)
Paul Stothard (5814)
Changxi Li (598285)

November 2015

Pearsonâs correlation coefficients between estimated breeding values and adjusted phenotypes and r...

Additional file 5: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Extended discussion on Parenchymal metabolism and molecular signaling, and Fat Pad lipid and energy ...

Additional file 8: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

Normalized gene expression level and statistical results of differentially expressed genes analysis ...

Additional file 14: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

IPA network analysis of differentially expressed genes analysis (FDR 10%) between High and Low group...

Additional file 4: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete list of genes considered in the development of the tissue cross-talk networks between mamma...

Additional file 3: Table S3. of Transcriptomics of liver and muscle in Holstein cows genetically divergent for fertility highlight differences in nutrient partitioning and inflammation processes

Bruce Moran (669351)
Sean Cummins (3498023)
Christopher Creevey (3498020)
Stephen Butler (405083)

August 2016

Sequencing Metrics; total reads, aligned reads and uniquely mapped reads per sample in each tissue w...

Additional file 1: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

Phenotypic and statistical analysis description for two groups of extreme values of fatty acids cont...

Additional file 3: Table S3. of Comparative muscle transcriptome associated with carcass traits of Nellore cattle

BĂĄrbara Silva-Vignato (4222060)
Luiz Coutinho (3508640)
Aline Cesar (3508628)
Mirele Poleti (3583997)
Luciana Regitano (3407810)
JĂşlio Balieiro (4222057)

July 2017

Differentially expressed genes obtained between high and low genomic breeding value groups for backf...

Additional file 7: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

Normalized gene expression level and statistical results of differentially expressed genes analysis ...

Additional file 12: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

Functional enrichment and significant category (BH-adj <10%) are shown from differentially expressed...

Additional file 3: of Impact of energy restriction during late gestation on the muscle and blood transcriptome of beef calves after preconditioning

Leticia Sanglard (5791802)
Moysés Nascimento (4252765)
Philipe Moriel (5791805)
Jeffrey Sommer (5791808)
Melissa Ashwell (5791811)
Matthew Poore (5791814)
Márcio Duarte (5791817)
Nick Serão (4589707)

September 2018

Gene set enrichment analysis output for blood. Excel file with term ontologies from the enrichment a...

Additional file 1: of Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls

Anne-Marie English (5141153)
Sineád Waters (5141159)
Paul Cormican (147333)
Colin Byrne (2431744)
Seán Fair (5141156)
David Kenny (3505283)

April 2018

Molecular and cellular function of differentially expressed genes of the subcutaneous adipose tissue...

Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls

English, Anne-Marie
Waters, Sinead M.
Cormican, Paul
Byrne, Colin J
Fair, Seán
Kenny, David A.

July 2018

The dataset generated during and analysed in the current study are available in the NCBI’s Gene Expr...

Additional file 3: of Residual feed intake phenotype and gender affect the expression of key genes of the lipogenesis pathway in subcutaneous adipose tissue of beef cattle

Clare McKenna (5927276)
Richard Porter (291839)
Kate Keogh (777352)
Sinead Waters (3505286)
Mark McGee (3994640)
David Kenny (3505283)

September 2018

Correlogram highlighting the correlation between all adipose tissue candidate genes from adipose tis...

Additional file 3: Table S1. of Gene expression profile of intramuscular muscle in Nellore cattle with extreme values of fatty acid

Chiaia, Hermenegildo L.J.
Gordo, Daniel M.
Feitosa, Fabieli L.B.
Peripolli, Elisa
Silva, Rafael M.de O
de Oliveira, Henrique N.
Coutinho, Luiz L.
Pereira, Angélica S.C.
Ferrinho, Adrielle M.
Baldi, Fernando
de Lemos, Marcos Vinicius A.
Stafuzza, Nedenia B.
Espigolan, Rafael
Berton, Mariana P.
Cesar, Aline S.M.
Tonussi, Rafael L.
Gimenez, Daniela F.J.
Mueller, Lenise F.
de Albuquerque, Lucia G.
Aboujaoude, Carolyn
Utembergue, Bruno L.
Fonseca, Larissa F.S.
Olivieri, Bianca F.
Duckett, Susan

January 2016

Differentially expressed genes for C14:0. Table S2. Differentially expressed genes for C16:0. Table ...

Additional file 6: of Genome-wide association and genomic prediction of breeding values for fatty acid composition in subcutaneous adipose and longissimus lumborum muscle of beef cattle

Liuhong Chen (598284)
Chinyere Ekine-Dzivenu (3530639)
Michael Vinsky (3530636)
John Basarab (3530648)
Jennifer Aalhus (3530642)
Mike Dugan (3530645)
Carolyn Fitzsimmons (77552)
Paul Stothard (5814)
Changxi Li (598285)

November 2015

Pearsonâs correlation coefficients between estimated breeding values and adjusted phenotypes and r...

Additional file 5: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Extended discussion on Parenchymal metabolism and molecular signaling, and Fat Pad lipid and energy ...

Additional file 8: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

Normalized gene expression level and statistical results of differentially expressed genes analysis ...

Additional file 14: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

IPA network analysis of differentially expressed genes analysis (FDR 10%) between High and Low group...

Additional file 4: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete list of genes considered in the development of the tissue cross-talk networks between mamma...

Additional file 3: Table S3. of Transcriptomics of liver and muscle in Holstein cows genetically divergent for fertility highlight differences in nutrient partitioning and inflammation processes

Bruce Moran (669351)
Sean Cummins (3498023)
Christopher Creevey (3498020)
Stephen Butler (405083)

August 2016

Sequencing Metrics; total reads, aligned reads and uniquely mapped reads per sample in each tissue w...

Additional file 1: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

Phenotypic and statistical analysis description for two groups of extreme values of fatty acids cont...

Additional file 3: Table S3. of Comparative muscle transcriptome associated with carcass traits of Nellore cattle

BĂĄrbara Silva-Vignato (4222060)
Luiz Coutinho (3508640)
Aline Cesar (3508628)
Mirele Poleti (3583997)
Luciana Regitano (3407810)
JĂşlio Balieiro (4222057)

July 2017

Differentially expressed genes obtained between high and low genomic breeding value groups for backf...

Additional file 7: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

Normalized gene expression level and statistical results of differentially expressed genes analysis ...

Additional file 12: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

Aline Cesar (3508628)
Luciana Regitano (3407810)
Mirele Poleti (3583997)
Sónia Andrade (3583991)
Polyana Tizioto (3562289)
Priscila Oliveira (3583985)
Andrezza Felício (3584003)
Michele do Nascimento (3584006)
Amália Chaves (3583994)
Dante Lanna (3584009)
Rymer Tullio (3583988)
Renata Nassu (3584000)
James Koltes (3570086)
Eric Fritz-Waters (3570083)
Gerson Mourão (3583982)
Adhemar Zerlotini-Neto (3584012)
James Reecy (3561878)
Luiz Coutinho (3508640)

November 2016

Functional enrichment and significant category (BH-adj <10%) are shown from differentially expressed...

Additional file 3: of Impact of energy restriction during late gestation on the muscle and blood transcriptome of beef calves after preconditioning

Leticia Sanglard (5791802)
Moysés Nascimento (4252765)
Philipe Moriel (5791805)
Jeffrey Sommer (5791808)
Melissa Ashwell (5791811)
Matthew Poore (5791814)
Márcio Duarte (5791817)
Nick Serão (4589707)

September 2018

Gene set enrichment analysis output for blood. Excel file with term ontologies from the enrichment a...

Additional file 3: of Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls

Abstract

Extracted data

Additional file 3: of Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls

Abstract

Extracted data

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