Table S1. The functional GSTM analyzed. Table S2. The GSTM pseudogenes detected. Table S3. PCR primers and sequencing primers. Figure S1. NJ and ML tree of the primate and tree shrew GSTM genes. Figure S2. A dotplot of Humans and Chimpanzees GSTM gene cluster. Figure S3. Genotyping results in chimpanzees by ddPCR and read-depth approaches. Figure S4. The length and frequency of the deletions shared between humans and chimpanzees. Figure S5. The manual alignment of the SDs of humans, chimpanzees and orangutans. Figure S6. Maximum likelihood trees of the human and chimpanzee segmental duplications using MAFFT [66]. Figure S7. The probability of a deletion with a similar upstream breakpoint to recurrently evolve independently in chimpanzees an...
Abstract Background The common deletion of the glutathione S-transferase Mu 1 (GSTM1) gene in humans...
Supplementary figures and tables. Figure S1: Comparison of thresholds to retrieve the number of comm...
Phylogeny of SPATA31 proteins. Neighbor-Joining tree [43] of SPATA31 protein sequences from human (c...
Sequence alignment of the GSTM1 region of 7 deleted humans and 7 deleted chimpanzees and reference g...
Alignment of genomic nucleotide sequences of SIGLEC11 and SIGLEC16 in human, chimpanzee, gorilla, gi...
List of metazoan species used for the phylogenetic analysis. Table S2. List of mammalian species use...
Table S4. Retrogenes in Primates. The table summarizes the properties of GNA- retrogenes found in Pr...
Chimp-specific RIs in genes. Proportion of ENSEMBL-annotated genes in the whole reference genome Pan...
Phylogenetic relationships of the A/Aâ regions of SIGLEC11 and SIGLEC16. The partial sequence of b...
Table S13. List of SNPs completely fixed for different alleles in Bornean and North Sumatran orangut...
SVA_D elements in gorilla, chimpanzee and humans. Subfamily denominations, total number of elements ...
Genotype accuracy based on frequency of alleles imputed. Data represent results of variants imputed ...
Figure S1. Tiling Across Large Enhancer Regions. Figure S2. Reproducibility of Tiling Scores. Figure...
Table S2. Genomic annotation of the A-to-I RNA editing sites in Alu elements. Table S5. Proportion o...
Table S1. Median values of substitution rates for non-synonymous sites (dN) and synonymous sites (dS...
Abstract Background The common deletion of the glutathione S-transferase Mu 1 (GSTM1) gene in humans...
Supplementary figures and tables. Figure S1: Comparison of thresholds to retrieve the number of comm...
Phylogeny of SPATA31 proteins. Neighbor-Joining tree [43] of SPATA31 protein sequences from human (c...
Sequence alignment of the GSTM1 region of 7 deleted humans and 7 deleted chimpanzees and reference g...
Alignment of genomic nucleotide sequences of SIGLEC11 and SIGLEC16 in human, chimpanzee, gorilla, gi...
List of metazoan species used for the phylogenetic analysis. Table S2. List of mammalian species use...
Table S4. Retrogenes in Primates. The table summarizes the properties of GNA- retrogenes found in Pr...
Chimp-specific RIs in genes. Proportion of ENSEMBL-annotated genes in the whole reference genome Pan...
Phylogenetic relationships of the A/Aâ regions of SIGLEC11 and SIGLEC16. The partial sequence of b...
Table S13. List of SNPs completely fixed for different alleles in Bornean and North Sumatran orangut...
SVA_D elements in gorilla, chimpanzee and humans. Subfamily denominations, total number of elements ...
Genotype accuracy based on frequency of alleles imputed. Data represent results of variants imputed ...
Figure S1. Tiling Across Large Enhancer Regions. Figure S2. Reproducibility of Tiling Scores. Figure...
Table S2. Genomic annotation of the A-to-I RNA editing sites in Alu elements. Table S5. Proportion o...
Table S1. Median values of substitution rates for non-synonymous sites (dN) and synonymous sites (dS...
Abstract Background The common deletion of the glutathione S-transferase Mu 1 (GSTM1) gene in humans...
Supplementary figures and tables. Figure S1: Comparison of thresholds to retrieve the number of comm...
Phylogeny of SPATA31 proteins. Neighbor-Joining tree [43] of SPATA31 protein sequences from human (c...