Additional file 2: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Additional file 1: Table S1. of Next-generation sequencing methylation profiling of subjects with obesity identifies novel gene changes

Samantha Day (3560522)
Richard Coletta (3560528)
Joon Kim (510697)
Latoya Campbell (3560537)
Tonya Benjamin (3560519)
Lori Roust (3560531)
Elena De Filippis (2993133)
Valentin Dinu (801175)
Gabriel Shaibi (3560525)
Lawrence Mandarino (3505169)
Dawn Coletta (3560534)

July 2016

The 13,130 differentially methylated cytosines (DMCs; Pâ<â0.05) that were located within a promo...

Additional file 9: Figure S5. of Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns

Marie Kirby (3928127)
Ryne Ramaker (3533108)
Brian Roberts (413821)
Brittany Lasseigne (3928124)
David Gunther (3928130)
Todd Burwell (3533105)
Nicholas Davis (3928121)
Zulfiqar Gulzar (3928133)
Devin Absher (217357)
Sara Cooper (668192)
James Brooks (160771)
Richard Myers (179413)

April 2017

ROC curve and waterfall plot for the top hypermethylated CpG model in the TCGA validation cohort (a-...

Additional file 5: of Many obesity-associated SNPs strongly associate with DNA methylation changes at proximal promoters and enhancers

Sarah Voisin (695350)
Markus Almén (3432941)
Galina Zheleznyakova (625786)
Lina Lundberg (3557939)
Sanaz Zarei (3557936)
Sandra Castillo (218332)
Fia Eriksson (3557933)
Emil Nilsson (3557942)
Matthias Blüher (103713)
Yvonne Böttcher (103725)
Peter Kovacs (103720)
Janis Klovins (76934)
Mathias Rask-Andersen (446207)
Helgi Schiöth (3432935)

October 2015

Principal component analysis of the two study groups ( n = 355) on the first three principal compon...

Additional file 4: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S2. Distribution of differentially methylated CpG sites in relation to the nearest gene region...

Additional file 6: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S4. Differentially methylated CpG sites located at both gene promoters and CpG islands. This t...

Additional file 12: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S10. Pathway enrichment analysis of the selected genes with multiple hypermethylated CpG sites...

Additional file 14: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S12. GO molecular function analysis of the overlapping genes. GO molecular function analyses f...

Additional file 9: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S7. Pathway enrichment analysis of promoter hypermethylated genes. Pathway enrichment analysis...

Additional file 8: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S6. GO molecular function analysis of promoter hypermethylated genes. GO molecular function an...

Additional file 10: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S8. Pathway enrichment analysis of the genes included in PPI networks. Pathway enrichment anal...

Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity-a pilot study

Cheng Y
Monteiro C
Matos M
You J
Fraga A
Pereira C
Catalán V
Rodríguez A
Gómez-Ambrosi J
Frühbeck G
Ribeiro R
Hu P

January 2018

Background: Periprostatic adipose tissue (PPAT) has been recognized to associate with prostate cance...

Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposit : a pilot study

Cheng, Yan
Monteiro, Cátia
Matos, Andreia
You, Jiaying
Fraga, Avelino
Pereira, Carina
Catalán, Victoria
Rodríguez, Amaia
Gómez-Ambrosi, Javier
Frühbeck, Gema
Ribeiro, Ricardo
Hu, Pingzhao

January 2018

Additional file 2: of Genome-wide DNA methylation analysis reveals loci that distinguish different types of adipose tissue in obese individuals

Donia Macartney-Coxson (326420)
Miles Benton (321392)
Ray Blick (3999590)
Richard Stubbs (688395)
Ronald Hagan (290342)
Michael Langston (3446957)

May 2017

Annotated data for the 3239 significantly differentially methylated CpG sites between omental and ab...

Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng
Cátia Monteiro
Andreia Matos
Jiaying You
Avelino Fraga
Carina Pereira
Victoria Catalán
Amaia Rodríguez
Javier Gómez-Ambrosi
Gema Frühbeck
Ricardo Ribeiro
Pingzhao Hu

April 2018

Abstract Background Periprostatic adipose tissue (PPAT) has been recognized to associate with prosta...

Additional file 8: Figure S4. of Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns

Marie Kirby (3928127)
Ryne Ramaker (3533108)
Brian Roberts (413821)
Brittany Lasseigne (3928124)
David Gunther (3928130)
Todd Burwell (3533105)
Nicholas Davis (3928121)
Zulfiqar Gulzar (3928133)
Devin Absher (217357)
Sara Cooper (668192)
James Brooks (160771)
Richard Myers (179413)

April 2017

Boxplots of CpGs in the top diagnostic model from hypermethylated CpGs. Normal data is from benign-a...

Additional file 1: Table S1. of Next-generation sequencing methylation profiling of subjects with obesity identifies novel gene changes

Samantha Day (3560522)
Richard Coletta (3560528)
Joon Kim (510697)
Latoya Campbell (3560537)
Tonya Benjamin (3560519)
Lori Roust (3560531)
Elena De Filippis (2993133)
Valentin Dinu (801175)
Gabriel Shaibi (3560525)
Lawrence Mandarino (3505169)
Dawn Coletta (3560534)

July 2016

The 13,130 differentially methylated cytosines (DMCs; Pâ<â0.05) that were located within a promo...

Additional file 9: Figure S5. of Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns

Marie Kirby (3928127)
Ryne Ramaker (3533108)
Brian Roberts (413821)
Brittany Lasseigne (3928124)
David Gunther (3928130)
Todd Burwell (3533105)
Nicholas Davis (3928121)
Zulfiqar Gulzar (3928133)
Devin Absher (217357)
Sara Cooper (668192)
James Brooks (160771)
Richard Myers (179413)

April 2017

ROC curve and waterfall plot for the top hypermethylated CpG model in the TCGA validation cohort (a-...

Additional file 5: of Many obesity-associated SNPs strongly associate with DNA methylation changes at proximal promoters and enhancers

Sarah Voisin (695350)
Markus Almén (3432941)
Galina Zheleznyakova (625786)
Lina Lundberg (3557939)
Sanaz Zarei (3557936)
Sandra Castillo (218332)
Fia Eriksson (3557933)
Emil Nilsson (3557942)
Matthias Blüher (103713)
Yvonne Böttcher (103725)
Peter Kovacs (103720)
Janis Klovins (76934)
Mathias Rask-Andersen (446207)
Helgi Schiöth (3432935)

October 2015

Principal component analysis of the two study groups ( n = 355) on the first three principal compon...

Additional file 4: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S2. Distribution of differentially methylated CpG sites in relation to the nearest gene region...

Additional file 6: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S4. Differentially methylated CpG sites located at both gene promoters and CpG islands. This t...

Additional file 12: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S10. Pathway enrichment analysis of the selected genes with multiple hypermethylated CpG sites...

Additional file 14: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S12. GO molecular function analysis of the overlapping genes. GO molecular function analyses f...

Additional file 9: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S7. Pathway enrichment analysis of promoter hypermethylated genes. Pathway enrichment analysis...

Additional file 8: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S6. GO molecular function analysis of promoter hypermethylated genes. GO molecular function an...

Additional file 10: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng (149222)
Cátia Monteiro (5113517)
Andreia Matos (5113523)
Jiaying You (5113520)
Avelino Fraga (740667)
Carina Pereira (546267)
Victoria Catalán (260177)
Amaia Rodríguez (260171)
Javier Gómez-Ambrosi (260192)
Gema Frühbeck (161466)
Ricardo Ribeiro (3705724)
Pingzhao Hu (62169)

April 2018

Table S8. Pathway enrichment analysis of the genes included in PPI networks. Pathway enrichment anal...

Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity-a pilot study

Cheng Y
Monteiro C
Matos M
You J
Fraga A
Pereira C
Catalán V
Rodríguez A
Gómez-Ambrosi J
Frühbeck G
Ribeiro R
Hu P

January 2018

Background: Periprostatic adipose tissue (PPAT) has been recognized to associate with prostate cance...

Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposit : a pilot study

Cheng, Yan
Monteiro, Cátia
Matos, Andreia
You, Jiaying
Fraga, Avelino
Pereira, Carina
Catalán, Victoria
Rodríguez, Amaia
Gómez-Ambrosi, Javier
Frühbeck, Gema
Ribeiro, Ricardo
Hu, Pingzhao

January 2018

Additional file 2: of Genome-wide DNA methylation analysis reveals loci that distinguish different types of adipose tissue in obese individuals

Donia Macartney-Coxson (326420)
Miles Benton (321392)
Ray Blick (3999590)
Richard Stubbs (688395)
Ronald Hagan (290342)
Michael Langston (3446957)

May 2017

Annotated data for the 3239 significantly differentially methylated CpG sites between omental and ab...

Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Yan Cheng
Cátia Monteiro
Andreia Matos
Jiaying You
Avelino Fraga
Carina Pereira
Victoria Catalán
Amaia Rodríguez
Javier Gómez-Ambrosi
Gema Frühbeck
Ricardo Ribeiro
Pingzhao Hu

April 2018

Abstract Background Periprostatic adipose tissue (PPAT) has been recognized to associate with prosta...

Additional file 8: Figure S4. of Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns

Marie Kirby (3928127)
Ryne Ramaker (3533108)
Brian Roberts (413821)
Brittany Lasseigne (3928124)
David Gunther (3928130)
Todd Burwell (3533105)
Nicholas Davis (3928121)
Zulfiqar Gulzar (3928133)
Devin Absher (217357)
Sara Cooper (668192)
James Brooks (160771)
Richard Myers (179413)

April 2017

Boxplots of CpGs in the top diagnostic model from hypermethylated CpGs. Normal data is from benign-a...

Additional file 1: Table S1. of Next-generation sequencing methylation profiling of subjects with obesity identifies novel gene changes

Samantha Day (3560522)
Richard Coletta (3560528)
Joon Kim (510697)
Latoya Campbell (3560537)
Tonya Benjamin (3560519)
Lori Roust (3560531)
Elena De Filippis (2993133)
Valentin Dinu (801175)
Gabriel Shaibi (3560525)
Lawrence Mandarino (3505169)
Dawn Coletta (3560534)

July 2016

The 13,130 differentially methylated cytosines (DMCs; Pâ<â0.05) that were located within a promo...

Additional file 9: Figure S5. of Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns

Marie Kirby (3928127)
Ryne Ramaker (3533108)
Brian Roberts (413821)
Brittany Lasseigne (3928124)
David Gunther (3928130)
Todd Burwell (3533105)
Nicholas Davis (3928121)
Zulfiqar Gulzar (3928133)
Devin Absher (217357)
Sara Cooper (668192)
James Brooks (160771)
Richard Myers (179413)

April 2017

ROC curve and waterfall plot for the top hypermethylated CpG model in the TCGA validation cohort (a-...

Additional file 5: of Many obesity-associated SNPs strongly associate with DNA methylation changes at proximal promoters and enhancers

Sarah Voisin (695350)
Markus Almén (3432941)
Galina Zheleznyakova (625786)
Lina Lundberg (3557939)
Sanaz Zarei (3557936)
Sandra Castillo (218332)
Fia Eriksson (3557933)
Emil Nilsson (3557942)
Matthias Blüher (103713)
Yvonne Böttcher (103725)
Peter Kovacs (103720)
Janis Klovins (76934)
Mathias Rask-Andersen (446207)
Helgi Schiöth (3432935)

October 2015

Principal component analysis of the two study groups ( n = 355) on the first three principal compon...

Additional file 2: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Abstract

Extracted data

Additional file 2: of Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Abstract

Extracted data

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