Table S2. Comparison of genes altered at the copy number level between ATM-associated tumours and tumours from TCGA. (XLSX 13 kb
Figure S1. Comparison of somatic mutation frequency between IBC and non-IBC in four subgroups. (a) T...
Types and number of variants detected (exome- and CAGP-wide) before and after variant filtration in ...
List of the MAFs used in the analysis. Table S2. List of 999 batch-biased variants in TCGA data. Tab...
Table S1. Genomic regions showing copy number loss or loss/LOH in at least 70% of ATM-associated tum...
Figure S1. Copy number variation profiles of ATM-associated tumours analysed with the OncoScan array...
Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...
Table S3. Driver gene analysis by MutSig. The two genes with q value <â10â3 (TP53 and FANCC, hig...
Figure S3. DNA copy number alterations in the IBC cohort. The genes with DNA copy number alterations...
Table S1. SVM BRCA1-like status and BRCA1ness-MLPA profiles in 10 breast cancer cell lines. Table S2...
Figure S2. Mutual exclusivity analysis in TCGA breast invasive carcinoma cohort. OncoPrints showing ...
Comparison of the frequency of select mutational events in breast cancer tumours versus cell lines. ...
Table S2. Pathogenic and likely pathogenic mutations identified in the studied cohort. Annotations a...
BACKGROUND: The ataxia telangiectasia mutated (ATM) gene is a moderate-risk breast cancer susceptibi...
Copy number variation (CNV) GISTIC The Cancer Genome Atlas (TCGA). List of significant (q <0.25) amp...
Comparison of DNA methylation frequency of genes screened in breast carcinomas with the methylation ...
Figure S1. Comparison of somatic mutation frequency between IBC and non-IBC in four subgroups. (a) T...
Types and number of variants detected (exome- and CAGP-wide) before and after variant filtration in ...
List of the MAFs used in the analysis. Table S2. List of 999 batch-biased variants in TCGA data. Tab...
Table S1. Genomic regions showing copy number loss or loss/LOH in at least 70% of ATM-associated tum...
Figure S1. Copy number variation profiles of ATM-associated tumours analysed with the OncoScan array...
Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...
Table S3. Driver gene analysis by MutSig. The two genes with q value <â10â3 (TP53 and FANCC, hig...
Figure S3. DNA copy number alterations in the IBC cohort. The genes with DNA copy number alterations...
Table S1. SVM BRCA1-like status and BRCA1ness-MLPA profiles in 10 breast cancer cell lines. Table S2...
Figure S2. Mutual exclusivity analysis in TCGA breast invasive carcinoma cohort. OncoPrints showing ...
Comparison of the frequency of select mutational events in breast cancer tumours versus cell lines. ...
Table S2. Pathogenic and likely pathogenic mutations identified in the studied cohort. Annotations a...
BACKGROUND: The ataxia telangiectasia mutated (ATM) gene is a moderate-risk breast cancer susceptibi...
Copy number variation (CNV) GISTIC The Cancer Genome Atlas (TCGA). List of significant (q <0.25) amp...
Comparison of DNA methylation frequency of genes screened in breast carcinomas with the methylation ...
Figure S1. Comparison of somatic mutation frequency between IBC and non-IBC in four subgroups. (a) T...
Types and number of variants detected (exome- and CAGP-wide) before and after variant filtration in ...
List of the MAFs used in the analysis. Table S2. List of 999 batch-biased variants in TCGA data. Tab...