Supporting information for the manuscript entitled <div><b><i>"Rapid Identification of Stable Clusters in Bacterial Populations Using the Adjusted Wallace Coefficient"</i></b> <b>doi:</b> https://doi.org/10.1101/299347<div><br></div><div>Files included in the zip archive:</div><div><br></div><div><b>README.txt:</b> Description of the various files in the archive</div><div><b>campylobacter_accessions.txt:</b> List of C jejuni genome accessions</div><div><b>salmonella_accessions.txt:</b> List of S enterica genome accessions</div><div><b><u>campylobacter (folder):</u></b><br></div><div><div><b>campylobacter_calls.csv:</b> allele call results</div><div><b>campylobacter_clusters.txt:</b> goeBURST cgmlst profile clusters</div><div><b>campylobacte...
Background: The opportunities for bacterial population genomics that are being realised by the ap...
Background: The thermophilic Campylobacter jejuni and Campylobacter coli are considered weakly clona...
We describe a model-based method for using multilocus sequence data to infer the clonal relationship...
Very diverse research fields frequently deal with the analysis of multiple clustering results, which...
Mutations in simple sequence repeat tracts are a major mechanism of phase variation in several bacte...
The definition of bacterial species is traditionally a taxonomic issue while bacterial populations a...
Future studies of population structure and the evolution of bacterial species will require DNA seque...
The advent of next-generation sequencing (NGS) has dramatically changed bacterial typing technologie...
Abstract Background Recently there has been an explosion in the availability of bacterial genomic se...
<p><b>A.</b> Conserved genes, <b>B.</b> Unique genes. For each strain, the mean value of CIB was cal...
This collection of data files contains, for each bacterial species: All raw genome sequence files...
<p>Classification and clustering of bacterial sequence reads from 220 women resulted in four cluster...
This PhD thesis work is fruit of a collaboration between the Department of Physics “Enrico Fermi” of...
We describe sequence tag-based analysis of microbial populations (STAMP) for characterization of pat...
1<p><i>A. phagocytophilum</i> strains from ticks were excluded. Only typeable strains with data for ...
Background: The opportunities for bacterial population genomics that are being realised by the ap...
Background: The thermophilic Campylobacter jejuni and Campylobacter coli are considered weakly clona...
We describe a model-based method for using multilocus sequence data to infer the clonal relationship...
Very diverse research fields frequently deal with the analysis of multiple clustering results, which...
Mutations in simple sequence repeat tracts are a major mechanism of phase variation in several bacte...
The definition of bacterial species is traditionally a taxonomic issue while bacterial populations a...
Future studies of population structure and the evolution of bacterial species will require DNA seque...
The advent of next-generation sequencing (NGS) has dramatically changed bacterial typing technologie...
Abstract Background Recently there has been an explosion in the availability of bacterial genomic se...
<p><b>A.</b> Conserved genes, <b>B.</b> Unique genes. For each strain, the mean value of CIB was cal...
This collection of data files contains, for each bacterial species: All raw genome sequence files...
<p>Classification and clustering of bacterial sequence reads from 220 women resulted in four cluster...
This PhD thesis work is fruit of a collaboration between the Department of Physics “Enrico Fermi” of...
We describe sequence tag-based analysis of microbial populations (STAMP) for characterization of pat...
1<p><i>A. phagocytophilum</i> strains from ticks were excluded. Only typeable strains with data for ...
Background: The opportunities for bacterial population genomics that are being realised by the ap...
Background: The thermophilic Campylobacter jejuni and Campylobacter coli are considered weakly clona...
We describe a model-based method for using multilocus sequence data to infer the clonal relationship...