Application of SNPscan in Genetic Screening for Common Hearing Loss Genes

  • Gao, Zixuan
  • Lu, Yu
  • Ke, Jia
  • Li, Tao
  • Hu, Ping
  • Song, Yu
  • Xu, Chiyu
  • Wang, Jie
  • Cheng, Jing
  • Zhang, Lei
  • Duan, Hong
  • Yuan, Huijun
  • Ma, Furong
Publication date
January 2016
Publisher
PLOS ONE
ISSN
1932-6203
Journal
issn:1932-6203

Abstract

The current study reports the successful application of a fast and efficient genetic screening system for common hearing loss (HL) genes based on SNPscan genotyping technology. Genetic analysis of 115 variants in common genes related to HL, GJB2, SLC26A4 and MT-RNR, was performed on 695 subjects with non-syndromic hearing loss (NSHL) from the Northern China. The results found that 38.7% (269/695) of cases carried bi-allelic pathogenic variants in GJB2 and SLC26A4 and 0.7% (5/695) of cases carried homoplasmic MT-RNR1 variants. The variant allele frequency of GJB2, SLC26A4 and MT-RNR1 was 19.8% (275/1390), 21.9% (304/1390), and 0.86% (6/695), respectively. This approach can explain similar to 40% of NSHL cases and thus is a useful tool for es...

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