International audienceThe computation of long-range potentials is one of the demanding tasks in Molecular Dynamics. During the last decades, an inventive panoply of methods was developed in order to reduce the CPU time of this task. In this work, we propose a fast method dedicated to the computation of the elec-trostatic potential in adaptively restrained systems. We exploit the fact that, in such systems, only some particles are allowed to move at each timestep. We developed an incremental algorithm derived from a multigrid-based alternative to traditional Fourier-based methods. Our algorithm was implemented inside LAMMPS, a popular molecular dynamics simulation package. We evaluated the method on different systems. We showed that the new ...
Molecular dynamics algorithms for systems of particles interacting through discrete or "hard" potent...
In adaptive resolution simulations the same system is concurrently modeled with different resolution...
International audienceForce computations are one of the most time consuming part in performing Molec...
International audienceThe computation of long-range potentials is one of the demanding tasks in Mole...
International audienceAdaptively Restrained Molecular Dynamics (ARMD) is a recently introduced parti...
International audienceInteraction potentials used in particle simulations are typically written as a...
Multipole-based algorithms allow for reduction in the effort required to solve the N - body problem ...
A number of problems arise when long-range forces, such as those governed by Bessel functions, are u...
We are designing and developing the algorithms for molecular dynamics (MD) simulations with large sy...
. We describe results obtained from a new implementation of Hockney's Particle-Particle Particl...
The appropriate treatment of long-range Coulombic forces is an area of great interest in the biomole...
Particle simulations have become an essential tool in various fields such as physics, astrophysics, ...
ABSTRACT: Within molecular dynamics simulations of protein]solvent systems the exact evaluation of l...
We present a flexible and fully adaptive dynamic load-balancing scheme, which is designed for partic...
In preparation to the exascale era, an alternative approach to calculate the electrostatic forces in...
Molecular dynamics algorithms for systems of particles interacting through discrete or "hard" potent...
In adaptive resolution simulations the same system is concurrently modeled with different resolution...
International audienceForce computations are one of the most time consuming part in performing Molec...
International audienceThe computation of long-range potentials is one of the demanding tasks in Mole...
International audienceAdaptively Restrained Molecular Dynamics (ARMD) is a recently introduced parti...
International audienceInteraction potentials used in particle simulations are typically written as a...
Multipole-based algorithms allow for reduction in the effort required to solve the N - body problem ...
A number of problems arise when long-range forces, such as those governed by Bessel functions, are u...
We are designing and developing the algorithms for molecular dynamics (MD) simulations with large sy...
. We describe results obtained from a new implementation of Hockney's Particle-Particle Particl...
The appropriate treatment of long-range Coulombic forces is an area of great interest in the biomole...
Particle simulations have become an essential tool in various fields such as physics, astrophysics, ...
ABSTRACT: Within molecular dynamics simulations of protein]solvent systems the exact evaluation of l...
We present a flexible and fully adaptive dynamic load-balancing scheme, which is designed for partic...
In preparation to the exascale era, an alternative approach to calculate the electrostatic forces in...
Molecular dynamics algorithms for systems of particles interacting through discrete or "hard" potent...
In adaptive resolution simulations the same system is concurrently modeled with different resolution...
International audienceForce computations are one of the most time consuming part in performing Molec...