Figure S3. Effect of repeated freeze-thaw cycles on the composition of faecal phageomes and bacteriomes (continued from Fig. 3 in the main text). A and B, α-diversity of bacterial (16S) and viral populations in faecal samples subjected to up to 5 successive freeze-thaw cycles or a prolonged storage at − 80 °C. C and D, Spearman rank ecological distances (β-diversity) between aliquotes of the three faecal samples used in the freeze-thaw experiment, calculated for both bacterial 16S and viral datasets and visualised via NMDS; NMDS stress values were 9.274361e-05 (C) and 9.926038e-05 (D). E, Barplot of relative abundance of bacterial taxonomic groups at the genus level. (PDF 376 kb
Lagaffe and Mushu virion concentration in the feces of mice. A) F. prausnitzii concentration (dark b...
Figure S1. Distribution of key bacterial taxa in the biofilm community obtained by DNA and mRNA deep...
Figure S1. Effect of primary filters on the number of reads. Figure S2. Insert size distribution. Fi...
Figure S2. Effect of storage on the composition of faecal phageomes and bacteriomes (continued from ...
Table S3. DESeq2 test results for differential abundance of putative phage contigs in six faecal sam...
Figure S1. Percentage of reads aligned to conserved segment of bacterial cpn60 gene and rRNA genes o...
All sequence data used in the analyses were deposited in the Sequence read Archive (SRA) (http://www...
Table S2. Description of faecal samples used in the study and summary of nucleic acid extraction and...
Microbiota composition of each sample of four subjects after all conditions of storage. L = Fresh ex...
Description of samples (per subject) used for evaluation of the optimized routes for pre-processing ...
Metaviromes reads associated with human and bacterial genomes. Percentage of reads are based on 5,00...
Similarity matrices of phage proteins within each proposed genus. For each pair of phages, the perce...
Due to ease of acquisition, fecal samples are often used in studies investigating gut microbiota. Im...
Summary of DNA concentrations obtained from the PPs extracted with optimized and adapted methods. Th...
Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...
Lagaffe and Mushu virion concentration in the feces of mice. A) F. prausnitzii concentration (dark b...
Figure S1. Distribution of key bacterial taxa in the biofilm community obtained by DNA and mRNA deep...
Figure S1. Effect of primary filters on the number of reads. Figure S2. Insert size distribution. Fi...
Figure S2. Effect of storage on the composition of faecal phageomes and bacteriomes (continued from ...
Table S3. DESeq2 test results for differential abundance of putative phage contigs in six faecal sam...
Figure S1. Percentage of reads aligned to conserved segment of bacterial cpn60 gene and rRNA genes o...
All sequence data used in the analyses were deposited in the Sequence read Archive (SRA) (http://www...
Table S2. Description of faecal samples used in the study and summary of nucleic acid extraction and...
Microbiota composition of each sample of four subjects after all conditions of storage. L = Fresh ex...
Description of samples (per subject) used for evaluation of the optimized routes for pre-processing ...
Metaviromes reads associated with human and bacterial genomes. Percentage of reads are based on 5,00...
Similarity matrices of phage proteins within each proposed genus. For each pair of phages, the perce...
Due to ease of acquisition, fecal samples are often used in studies investigating gut microbiota. Im...
Summary of DNA concentrations obtained from the PPs extracted with optimized and adapted methods. Th...
Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...
Lagaffe and Mushu virion concentration in the feces of mice. A) F. prausnitzii concentration (dark b...
Figure S1. Distribution of key bacterial taxa in the biofilm community obtained by DNA and mRNA deep...
Figure S1. Effect of primary filters on the number of reads. Figure S2. Insert size distribution. Fi...