Additional file 6: of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Additional file 1: Table S1. of Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

Silvia Arboleya (4340116)
Francesca Bottacini (133911)
Mary OâConnell-Motherway (4745418)
C. Ryan (3402638)
R. Ross (3461291)
Douwe van Sinderen (62590)
Catherine Stanton (223943)

January 2018

Bifidobacterium longum genomes publicly available used for different analysis along the study. Table...

Additional file 1: of Developing a network view of type 2 diabetes risk pathways through integration of genetic, genomic and functional data

Juan Fernรกndez-Tajes (6517679)
Kyle Gaulton (497560)
Martijn Bunt (6517658)
Jason Torres (6517661)
Matthias Thurner (6517664)
Anubha Mahajan (206768)
Anna Gloyn (3810184)
Kasper Lage (42180)
Mark McCarthy (157523)

March 2019

Table S1. 101 loci and candidate genes by loci used to calculate the positional candidacy score (PCS...

Additional file 6: of Comparative genomics of canine hemoglobin genes reveals primacy of beta subunit delta in adult carnivores

Sara ZaldĂvar-LĂłpez (3728560)
Jennie Rowell (3728551)
Elise Fiala (3728548)
Isain Zapata (3529622)
C. Couto (3728554)
Carlos Alvarez (599927)

February 2017

Taxonomy annotation of genes used for the phylogenetic analysis with identification number and speci...

Additional file 5 of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang (5090432)
Chaobin Qin (5090435)
Liping Yang (156318)
Ronghua Lu (3280347)
Xiaoyan Zhao (347268)
Guoxing Nie (5090438)

April 2018

Table S4. Human T2D-related gene database and their corresponding orthologues in mouse, chicken, fro...

Additional file 4: of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang (5090432)
Chaobin Qin (5090435)
Liping Yang (156318)
Ronghua Lu (3280347)
Xiaoyan Zhao (347268)
Guoxing Nie (5090438)

April 2018

Table S3. OMIM disease annotations of human carbohydrate/glucose metabolic genes by DAVID. Some gene...

Additional file 3: of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang (5090432)
Chaobin Qin (5090435)
Liping Yang (156318)
Ronghua Lu (3280347)
Xiaoyan Zhao (347268)
Guoxing Nie (5090438)

April 2018

Table S2. KEGG pathway annotations of zebrafish carbohydrate/glucose metabolic genes by DAVID. We fo...

Additional file 8: of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang (5090432)
Chaobin Qin (5090435)
Liping Yang (156318)
Ronghua Lu (3280347)
Xiaoyan Zhao (347268)
Guoxing Nie (5090438)

April 2018

Table S7. Organism-specific genes by Ensemble Compara. Each gene was manually verified and annotated...

Additional file 2: of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang (5090432)
Chaobin Qin (5090435)
Liping Yang (156318)
Ronghua Lu (3280347)
Xiaoyan Zhao (347268)
Guoxing Nie (5090438)

April 2018

Figure S1. Biological process annotation of 791 zebrafish carbohydrate/glucose metabolic genes using...

Additional file 1: Table S1. of Susceptibility to type 2 diabetes may be modulated by haplotypes in G6PC2, a target of positive selection

Nasser Al-Daghri (350024)
Chiara Pontremoli (722520)
Rachele Cagliani (24208)
Diego Forni (335427)
Majed Alokail (771998)
Omar Al-Attas (214555)
Shaun Sabico (772000)
Stefania Riva (543985)
Mario Clerici (34848)
Manuela Sironi (24204)

February 2017

List of metazoan species used for the phylogenetic analysis. Table S2. List of mammalian species use...

A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang
Chaobin Qin
Liping Yang
Ronghua Lu
Xiaoyan Zhao
Guoxing Nie

April 2018

Abstract Background Glucose plays a key role as an energy source in most mammals, but its importance...

Additional file 5: Table S5. of Whole genome sequence analysis of the TALLYHO/Jng mouse

James Denvir (182804)
Goran Boskovic (182809)
Jun Fan (246573)
Donald Primerano (3411065)
Jacaline Parkman (3411062)
Jung Kim (455846)

November 2016

Variants in orthologs of GWAS-associated and Mendelian Genes. List of orthologous genes to human gen...

Additional file 2 of Integrated epigenome, whole genome sequence and metabolome analyses identify novel multi-omics pathways in type 2 diabetes: a Middle Eastern study

Noha A. Yousri (16951334)
Omar M. E. Albagha (11704871)
Steven C. Hunt (10499012)

September 2023

Additional file 2: Table S1. Results of two way discovery replication T2D EWAS using cohorts 1 and 2...

Additional file 6: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
João Casal Novo Ribeiro (3411863)
Anis Larbi (55705)
João de Magalhães (3411860)

November 2015

Novel candidate conserved homologs associated with genes sets. Sheet 1: results using tissue gene se...

Additional file 2: of Investigation of the influence of high glucose on molecular and genetic responses: an in vitro study using a human intestine model

Tugce Boztepe (5156204)
Sukru Gulec (420155)

April 2018

Table S2. The list of the significantly downregulated genes under high glucose treatment condition (...

Additional file 1: of Dietary and genetic risk scores and incidence of type 2 diabetes

Ulrika Ericson (156578)
George Hindy (512699)
Isabel Drake (115126)
Christina-Alexandra Schulz (727982)
Louise Brunkwall (5145233)
Sophie Hellstrand (727981)
Peter Almgren (11999)
Marju Orho-Melander (12001)

May 2018

Table S1. Single nucleotide polymorphisms included in the GRS as they were reported to associate wit...

Additional file 1: Table S1. of Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

Silvia Arboleya (4340116)
Francesca Bottacini (133911)
Mary OâConnell-Motherway (4745418)
C. Ryan (3402638)
R. Ross (3461291)
Douwe van Sinderen (62590)
Catherine Stanton (223943)

January 2018

Bifidobacterium longum genomes publicly available used for different analysis along the study. Table...

Additional file 1: of Developing a network view of type 2 diabetes risk pathways through integration of genetic, genomic and functional data

Juan Fernรกndez-Tajes (6517679)
Kyle Gaulton (497560)
Martijn Bunt (6517658)
Jason Torres (6517661)
Matthias Thurner (6517664)
Anubha Mahajan (206768)
Anna Gloyn (3810184)
Kasper Lage (42180)
Mark McCarthy (157523)

March 2019

Table S1. 101 loci and candidate genes by loci used to calculate the positional candidacy score (PCS...

Additional file 6: of Comparative genomics of canine hemoglobin genes reveals primacy of beta subunit delta in adult carnivores

Sara ZaldĂvar-LĂłpez (3728560)
Jennie Rowell (3728551)
Elise Fiala (3728548)
Isain Zapata (3529622)
C. Couto (3728554)
Carlos Alvarez (599927)

February 2017

Taxonomy annotation of genes used for the phylogenetic analysis with identification number and speci...

Additional file 5 of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang (5090432)
Chaobin Qin (5090435)
Liping Yang (156318)
Ronghua Lu (3280347)
Xiaoyan Zhao (347268)
Guoxing Nie (5090438)

April 2018

Table S4. Human T2D-related gene database and their corresponding orthologues in mouse, chicken, fro...

Additional file 4: of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang (5090432)
Chaobin Qin (5090435)
Liping Yang (156318)
Ronghua Lu (3280347)
Xiaoyan Zhao (347268)
Guoxing Nie (5090438)

April 2018

Table S3. OMIM disease annotations of human carbohydrate/glucose metabolic genes by DAVID. Some gene...

Additional file 3: of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang (5090432)
Chaobin Qin (5090435)
Liping Yang (156318)
Ronghua Lu (3280347)
Xiaoyan Zhao (347268)
Guoxing Nie (5090438)

April 2018

Table S2. KEGG pathway annotations of zebrafish carbohydrate/glucose metabolic genes by DAVID. We fo...

Additional file 8: of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang (5090432)
Chaobin Qin (5090435)
Liping Yang (156318)
Ronghua Lu (3280347)
Xiaoyan Zhao (347268)
Guoxing Nie (5090438)

April 2018

Table S7. Organism-specific genes by Ensemble Compara. Each gene was manually verified and annotated...

Additional file 2: of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang (5090432)
Chaobin Qin (5090435)
Liping Yang (156318)
Ronghua Lu (3280347)
Xiaoyan Zhao (347268)
Guoxing Nie (5090438)

April 2018

Figure S1. Biological process annotation of 791 zebrafish carbohydrate/glucose metabolic genes using...

Additional file 1: Table S1. of Susceptibility to type 2 diabetes may be modulated by haplotypes in G6PC2, a target of positive selection

Nasser Al-Daghri (350024)
Chiara Pontremoli (722520)
Rachele Cagliani (24208)
Diego Forni (335427)
Majed Alokail (771998)
Omar Al-Attas (214555)
Shaun Sabico (772000)
Stefania Riva (543985)
Mario Clerici (34848)
Manuela Sironi (24204)

February 2017

List of metazoan species used for the phylogenetic analysis. Table S2. List of mammalian species use...

A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Yuru Zhang
Chaobin Qin
Liping Yang
Ronghua Lu
Xiaoyan Zhao
Guoxing Nie

April 2018

Abstract Background Glucose plays a key role as an energy source in most mammals, but its importance...

Additional file 5: Table S5. of Whole genome sequence analysis of the TALLYHO/Jng mouse

James Denvir (182804)
Goran Boskovic (182809)
Jun Fan (246573)
Donald Primerano (3411065)
Jacaline Parkman (3411062)
Jung Kim (455846)

November 2016

Variants in orthologs of GWAS-associated and Mendelian Genes. List of orthologous genes to human gen...

Additional file 2 of Integrated epigenome, whole genome sequence and metabolome analyses identify novel multi-omics pathways in type 2 diabetes: a Middle Eastern study

Noha A. Yousri (16951334)
Omar M. E. Albagha (11704871)
Steven C. Hunt (10499012)

September 2023

Additional file 2: Table S1. Results of two way discovery replication T2D EWAS using cohorts 1 and 2...

Additional file 6: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
João Casal Novo Ribeiro (3411863)
Anis Larbi (55705)
João de Magalhães (3411860)

November 2015

Novel candidate conserved homologs associated with genes sets. Sheet 1: results using tissue gene se...

Additional file 2: of Investigation of the influence of high glucose on molecular and genetic responses: an in vitro study using a human intestine model

Tugce Boztepe (5156204)
Sukru Gulec (420155)

April 2018

Table S2. The list of the significantly downregulated genes under high glucose treatment condition (...

Additional file 1: of Dietary and genetic risk scores and incidence of type 2 diabetes

Ulrika Ericson (156578)
George Hindy (512699)
Isabel Drake (115126)
Christina-Alexandra Schulz (727982)
Louise Brunkwall (5145233)
Sophie Hellstrand (727981)
Peter Almgren (11999)
Marju Orho-Melander (12001)

May 2018

Table S1. Single nucleotide polymorphisms included in the GRS as they were reported to associate wit...

Additional file 1: Table S1. of Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

Silvia Arboleya (4340116)
Francesca Bottacini (133911)
Mary OâConnell-Motherway (4745418)
C. Ryan (3402638)
R. Ross (3461291)
Douwe van Sinderen (62590)
Catherine Stanton (223943)

January 2018

Bifidobacterium longum genomes publicly available used for different analysis along the study. Table...

Additional file 1: of Developing a network view of type 2 diabetes risk pathways through integration of genetic, genomic and functional data

Juan Fernรกndez-Tajes (6517679)
Kyle Gaulton (497560)
Martijn Bunt (6517658)
Jason Torres (6517661)
Matthias Thurner (6517664)
Anubha Mahajan (206768)
Anna Gloyn (3810184)
Kasper Lage (42180)
Mark McCarthy (157523)

March 2019

Table S1. 101 loci and candidate genes by loci used to calculate the positional candidacy score (PCS...

Additional file 6: of Comparative genomics of canine hemoglobin genes reveals primacy of beta subunit delta in adult carnivores

Sara ZaldĂvar-LĂłpez (3728560)
Jennie Rowell (3728551)
Elise Fiala (3728548)
Isain Zapata (3529622)
C. Couto (3728554)
Carlos Alvarez (599927)

February 2017

Taxonomy annotation of genes used for the phylogenetic analysis with identification number and speci...

Additional file 6: of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Abstract

Extracted data

Additional file 6: of A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals

Abstract

Extracted data

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