Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis | ORKG Ask

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Additional file 5: Figure S2. of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen (4823031)
Lidya Chaidir (103945)
Arjan van Laarhoven (4823034)
Sofiati Dian (103936)
Ahmad Ganiem (4823028)
Hanna Nebenzahl-Guimaraes (566998)
Martijn Huynen (189382)
Bachti Alisjahbana (270243)
Bas Dutilh (3461924)
Reinout van Crevel (60606)

February 2018

P-values of association between genes and TB disease phenotype in the discovery and validation sets....

Additional file 12: Table S5. of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen (4823031)
Lidya Chaidir (103945)
Arjan van Laarhoven (4823034)
Sofiati Dian (103936)
Ahmad Ganiem (4823028)
Hanna Nebenzahl-Guimaraes (566998)
Martijn Huynen (189382)
Bachti Alisjahbana (270243)
Bas Dutilh (3461924)
Reinout van Crevel (60606)

February 2018

PE / PPE genes and drug resistance genes excluded for the phylogeny construction. Listed are the gen...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis.

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

January 2018

Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why some people d...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis.

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

January 2018

Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why some people d...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

February 2018

BACKGROUND: Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why s...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

February 2018

BACKGROUND: Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why s...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

February 2018

BACKGROUND: Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why s...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

February 2018

BACKGROUND: Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why s...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout
Sub Bioinformatics
Theoretical Biology and Bioinformatics

February 2018

BACKGROUND: Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why s...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen
Lidya Chaidir
Arjan van Laarhoven
Sofiati Dian
Ahmad Rizal Ganiem
Hanna Nebenzahl-Guimaraes
Martijn A. Huynen
Bachti Alisjahbana
Bas E. Dutilh
Reinout van Crevel

February 2018

Abstract Background Meningitis is the most severe manifestation of tuberculosis. It is largely unkno...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Guimarães, Hanna Nebenzahl
Huynen, Martijn A.
Alisjahbana, Bachti
Dutilh, Bas E.
van Crevel, Reinout

January 2018

Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why some people d...

Additional file 14: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen (4823031)
Lidya Chaidir (103945)
Arjan van Laarhoven (4823034)
Sofiati Dian (103936)
Ahmad Ganiem (4823028)
Hanna Nebenzahl-Guimaraes (566998)
Martijn Huynen (189382)
Bachti Alisjahbana (270243)
Bas Dutilh (3461924)
Reinout van Crevel (60606)

February 2018

De novo genome assembly statistics. File listing different measures used to check the quality of the...

Additional file 6: Figure S3. of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen (4823031)
Lidya Chaidir (103945)
Arjan van Laarhoven (4823034)
Sofiati Dian (103936)
Ahmad Ganiem (4823028)
Hanna Nebenzahl-Guimaraes (566998)
Martijn Huynen (189382)
Bachti Alisjahbana (270243)
Bas Dutilh (3461924)
Reinout van Crevel (60606)

February 2018

Phylogenetic tree of 322Â M. tuberculosis strains isolated from TBM and PTB patients. The highlighte...

Additional file 5: Figure S2. of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen (4823031)
Lidya Chaidir (103945)
Arjan van Laarhoven (4823034)
Sofiati Dian (103936)
Ahmad Ganiem (4823028)
Hanna Nebenzahl-Guimaraes (566998)
Martijn Huynen (189382)
Bachti Alisjahbana (270243)
Bas Dutilh (3461924)
Reinout van Crevel (60606)

February 2018

P-values of association between genes and TB disease phenotype in the discovery and validation sets....

Additional file 12: Table S5. of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen (4823031)
Lidya Chaidir (103945)
Arjan van Laarhoven (4823034)
Sofiati Dian (103936)
Ahmad Ganiem (4823028)
Hanna Nebenzahl-Guimaraes (566998)
Martijn Huynen (189382)
Bachti Alisjahbana (270243)
Bas Dutilh (3461924)
Reinout van Crevel (60606)

February 2018

PE / PPE genes and drug resistance genes excluded for the phylogeny construction. Listed are the gen...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis.

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

January 2018

Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why some people d...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis.

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

January 2018

Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why some people d...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

February 2018

BACKGROUND: Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why s...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

February 2018

BACKGROUND: Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why s...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

February 2018

BACKGROUND: Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why s...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout

February 2018

BACKGROUND: Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why s...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Nebenzahl-Guimaraes, Hanna
Huynen, Martijn A
Alisjahbana, Bachti
Dutilh, Bas E
van Crevel, Reinout
Sub Bioinformatics
Theoretical Biology and Bioinformatics

February 2018

BACKGROUND: Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why s...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen
Lidya Chaidir
Arjan van Laarhoven
Sofiati Dian
Ahmad Rizal Ganiem
Hanna Nebenzahl-Guimaraes
Martijn A. Huynen
Bachti Alisjahbana
Bas E. Dutilh
Reinout van Crevel

February 2018

Abstract Background Meningitis is the most severe manifestation of tuberculosis. It is largely unkno...

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Ruesen, Carolien
Chaidir, Lidya
van Laarhoven, Arjan
Dian, Sofiati
Ganiem, Ahmad Rizal
Guimarães, Hanna Nebenzahl
Huynen, Martijn A.
Alisjahbana, Bachti
Dutilh, Bas E.
van Crevel, Reinout

January 2018

Meningitis is the most severe manifestation of tuberculosis. It is largely unknown why some people d...

Additional file 14: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen (4823031)
Lidya Chaidir (103945)
Arjan van Laarhoven (4823034)
Sofiati Dian (103936)
Ahmad Ganiem (4823028)
Hanna Nebenzahl-Guimaraes (566998)
Martijn Huynen (189382)
Bachti Alisjahbana (270243)
Bas Dutilh (3461924)
Reinout van Crevel (60606)

February 2018

De novo genome assembly statistics. File listing different measures used to check the quality of the...

Additional file 6: Figure S3. of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen (4823031)
Lidya Chaidir (103945)
Arjan van Laarhoven (4823034)
Sofiati Dian (103936)
Ahmad Ganiem (4823028)
Hanna Nebenzahl-Guimaraes (566998)
Martijn Huynen (189382)
Bachti Alisjahbana (270243)
Bas Dutilh (3461924)
Reinout van Crevel (60606)

February 2018

Phylogenetic tree of 322Â M. tuberculosis strains isolated from TBM and PTB patients. The highlighte...

Additional file 5: Figure S2. of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen (4823031)
Lidya Chaidir (103945)
Arjan van Laarhoven (4823034)
Sofiati Dian (103936)
Ahmad Ganiem (4823028)
Hanna Nebenzahl-Guimaraes (566998)
Martijn Huynen (189382)
Bachti Alisjahbana (270243)
Bas Dutilh (3461924)
Reinout van Crevel (60606)

February 2018

P-values of association between genes and TB disease phenotype in the discovery and validation sets....

Additional file 12: Table S5. of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

Carolien Ruesen (4823031)
Lidya Chaidir (103945)
Arjan van Laarhoven (4823034)
Sofiati Dian (103936)
Ahmad Ganiem (4823028)
Hanna Nebenzahl-Guimaraes (566998)
Martijn Huynen (189382)
Bachti Alisjahbana (270243)
Bas Dutilh (3461924)
Reinout van Crevel (60606)

February 2018

PE / PPE genes and drug resistance genes excluded for the phylogeny construction. Listed are the gen...