Loci file exported from clustering analysis performed in PyRAD. All molecular datasets referenced in study were exported by first importing this file into R using the RADami package (https://cran.r-project.org/web/packages/RADami/index.html), then subsetting individuals and loci and exporting as a phylip file
Pyrad .loci file for the dataset containing minimum 10 samples per locus. See "params_Darter_m10_RAx...
Zipped file containing 12 phylip files that contain the sequence data from all individuals for all 1...
Pyrad .loci file for the dataset containing minimum 30 samples per locus. See "params_Darter_m30_RAx...
Loci file exported from clustering analysis performed in PyRAD. All molecular datasets referenced in...
Locus file from pyRAD, clustering at 0.88 similarity, a minimum of 10 individuals per locus. This fi...
Locus file from pyRAD, clustering at 0.88 similarity, a minimum of 4 individuals per locus. This fil...
Complete concatenated phylogenetic dataset ( min. 4 individuals per locus) in phylip format. Cluster...
Output of the final step of the pyRAD software pipeline (Eaton and Ree, 2013). File contains both ha...
The full phylogenetic analysis conducted on all individuals was conducted on this file, exported fro...
Concatenated RAD loci for phrynosomatid lizards in phylip format for analyses in RAxML. Includes the...
A folder containing the .loci file with genomic data and three parameter files to recreate partition...
<p>m4/m14: data matrix clustering RAD-seq reads at 90% similarity threshold and consisting of loci t...
Large table including stats for each RAD locus globally and by population. The RAD sequence, mapping...
This is the final cleaned and filtered VCF file output from the program ipyrad for our data (https:/...
Gene clusters for non-redundant microbial gene catalog (clustered at 50% sequence identity) from 1,4...
Pyrad .loci file for the dataset containing minimum 10 samples per locus. See "params_Darter_m10_RAx...
Zipped file containing 12 phylip files that contain the sequence data from all individuals for all 1...
Pyrad .loci file for the dataset containing minimum 30 samples per locus. See "params_Darter_m30_RAx...
Loci file exported from clustering analysis performed in PyRAD. All molecular datasets referenced in...
Locus file from pyRAD, clustering at 0.88 similarity, a minimum of 10 individuals per locus. This fi...
Locus file from pyRAD, clustering at 0.88 similarity, a minimum of 4 individuals per locus. This fil...
Complete concatenated phylogenetic dataset ( min. 4 individuals per locus) in phylip format. Cluster...
Output of the final step of the pyRAD software pipeline (Eaton and Ree, 2013). File contains both ha...
The full phylogenetic analysis conducted on all individuals was conducted on this file, exported fro...
Concatenated RAD loci for phrynosomatid lizards in phylip format for analyses in RAxML. Includes the...
A folder containing the .loci file with genomic data and three parameter files to recreate partition...
<p>m4/m14: data matrix clustering RAD-seq reads at 90% similarity threshold and consisting of loci t...
Large table including stats for each RAD locus globally and by population. The RAD sequence, mapping...
This is the final cleaned and filtered VCF file output from the program ipyrad for our data (https:/...
Gene clusters for non-redundant microbial gene catalog (clustered at 50% sequence identity) from 1,4...
Pyrad .loci file for the dataset containing minimum 10 samples per locus. See "params_Darter_m10_RAx...
Zipped file containing 12 phylip files that contain the sequence data from all individuals for all 1...
Pyrad .loci file for the dataset containing minimum 30 samples per locus. See "params_Darter_m30_RAx...