This newick-formatted file contains 15 maximum-likelihood phylogenies produced in RAxML, one for each of the 15 gene subsets. These contain bootstrap values as well. This file incorporates nucleotide partitioning into the RAxML runs, and forms the basis for all of the trees in the manuscript
<p>The tree is drawn to scale with bootstrap values indicated along with the branches.</p
The zip file contains all the bootstrap gene files. There are 170 files (one for each gene) with 500...
Resulting phylogeny from the RAxML, partitioned, combined data, 50% occupancy analysis
This newick-formatted file contains 15 maximum-likelihood phylogenies produced in RAxML, one for eac...
Maximum likelihood phylogeny generated via RAxML and associated nonparametric bootstrap replicates f...
Supplemental Data: Data File D. Best-scoring Maximum Likelihood tree (newick format) resulting from...
This newick file contains the best tree topology with branch lengths after maximum-likelihood phylog...
We used RAxML v8.1.1 (Stamatakis 2014) to created a maximum-likelihood phylogeny for our concatenate...
Gene trees produced from 272 single copy genes, using RAxML. Trees are the consensus of 500 bootstra...
Input phylip files (.phy) and partition files (_part.txt) used for maximum likelihood tree generatio...
Resulting phylogeny from the RAxML, partitioned, combined data, 70% occupancy analysis
The maximum likelihood bootstrapping trees from "PHY_alignment.fas" (translated into amino acids), u...
Phylogeny reconstructed from concatenated nucleotide matrix of single genes in RAXML version 8. A si...
Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 164 species
Gene trees based on supercontigs (exons plus introns) alignments obtained via the RAxML with 200 bo...
<p>The tree is drawn to scale with bootstrap values indicated along with the branches.</p
The zip file contains all the bootstrap gene files. There are 170 files (one for each gene) with 500...
Resulting phylogeny from the RAxML, partitioned, combined data, 50% occupancy analysis
This newick-formatted file contains 15 maximum-likelihood phylogenies produced in RAxML, one for eac...
Maximum likelihood phylogeny generated via RAxML and associated nonparametric bootstrap replicates f...
Supplemental Data: Data File D. Best-scoring Maximum Likelihood tree (newick format) resulting from...
This newick file contains the best tree topology with branch lengths after maximum-likelihood phylog...
We used RAxML v8.1.1 (Stamatakis 2014) to created a maximum-likelihood phylogeny for our concatenate...
Gene trees produced from 272 single copy genes, using RAxML. Trees are the consensus of 500 bootstra...
Input phylip files (.phy) and partition files (_part.txt) used for maximum likelihood tree generatio...
Resulting phylogeny from the RAxML, partitioned, combined data, 70% occupancy analysis
The maximum likelihood bootstrapping trees from "PHY_alignment.fas" (translated into amino acids), u...
Phylogeny reconstructed from concatenated nucleotide matrix of single genes in RAXML version 8. A si...
Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 164 species
Gene trees based on supercontigs (exons plus introns) alignments obtained via the RAxML with 200 bo...
<p>The tree is drawn to scale with bootstrap values indicated along with the branches.</p
The zip file contains all the bootstrap gene files. There are 170 files (one for each gene) with 500...
Resulting phylogeny from the RAxML, partitioned, combined data, 50% occupancy analysis
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