VanWyngaardenM_etal_SeascapeGen_RADseq_SNPs

VCF file for 6605 SNPs used in gene-environment association analyses

Harrisson, Katherine

September 2017

The file Harrisson_etal_MurrayCod_6605_loci is a VCF formatted file that includes genotypes (6605 SN...

Hoey, Jennifer
Pinsky, Malin

June 2018

VCF file containing ddRADseq data for summer flounder. This file contains the first SNP on each cont...

RAD sequencing sheds new light on the genetic structure and local adaptation of European scallops and resolves their demographic histories

Vendrami, David L. J.
de Noia, Michele
Telesca, Luca
Handal, William
Charrier, Grégory
Boudry, Pierre
Eberhart-Phillips, Luke
Hoffman, Joseph I.

May 2019

WOS:000468025300051International audienceRecent developments in genomics are advancing our understan...

VanWyngaardenM_etal_SeascapeGen_RADseq_SNPs

Van Wyngaarden, Mallory
Snelgrove, Paul V. R.
DiBacco, Claudio
Hamilton, Lorraine C.
Rodriguez-Ezpeleta, Naiara
Zhan, Luyao
Beiko, Robert
Bradbury, Ian R.

February 2018

This VCF file contains 7216 RAD-seq derived SNPs detected among 12 Northwest Atlantic Ocean populati...

VanWyngaardenM_etal_RADseq_SNPs

Van Wyngaarden, Mallory
Snelgrove, Paul V.R.
DiBacco, Claudio
Hamilton, Lorraine C.
Rodríguez-Ezpeleta, Naiara
Jeffery, Nicholas W.
Stanley, Ryan R.E.
Bradbury, Ian R.

August 2016

This VCF file contains 7216 RAD-seq derived SNPs detected among 12 Northwest Atlantic Ocean populati...

VanWyngaardenM_etal_GeogDistMatrix

Van Wyngaarden, Mallory
Snelgrove, Paul V.R.
DiBacco, Claudio
Hamilton, Lorraine C.
Rodríguez-Ezpeleta, Naiara
Jeffery, Nicholas W.
Stanley, Ryan R.E.
Bradbury, Ian R.

August 2016

This file contains matrices of pairwise geographic distances (km; shortest distance and estimated oc...

VCF file of putative outlier SNPs

Katherine Silliman (6112862)

December 2018

VCF file of 235 putative adaptive SNPs derived from genotype-by-sequencing data of 117 Olympia oyste...

VCF files of ddRAD seq data of Bermuda petrel population

Rita O. Afonso
Francisco Pina Martins
Mónica C. Silva

January 2024

Two VCF files resulted from two different filtering and analyses of ddRAD sequencing data of the end...

VanWyngaardenM_etal_SeascapeGen_RADseq_Barcodes_Index

Mallory Van Wyngaarden (3199611)
Paul V. R. Snelgrove (242762)
Claudio DiBacco (3199614)
Lorraine C. Hamilton (714596)
Naiara Rodriguez-Ezpeleta (68554)
Luyao Zhan (5032535)
Robert Beiko (3245190)
Ian R. Bradbury (532219)

March 2018

This file contains population information and the sequences for the P1 Barcodes and the P2 Indexes ...

VCF file of putative neutral SNPs

Silliman, Katherine

December 2018

VCF file of 13,073 putative neutral SNPs derived from genotype-by-sequencing data of 117 Olympia oys...

Data from: Oceanographic variation influences spatial genomic structure in the sea scallop, Placopecten magellanicus

Van Wyngaarden, Mallory
Snelgrove, Paul V. R.
DiBacco, Claudio
Hamilton, Lorraine C.
Rodriguez-Ezpeleta, Naiara
Zhan, Luyao
Beiko, Robert
Bradbury, Ian R.

Environmental factors can influence diversity and population structure in marine species and accurat...

Data files associated with the manuscript, "Adaptive Genetic Variation Underlies Biocomplexity of Atlantic Cod in the Gulf of Maine and on Georges Bank."

Gemma Clucas (4235221)

February 2019

Included are VCFs for the SNP datasets used for analysis and a supplementary file detailing Fst outl...

Pmaximus_Microsatellite_genotypes

Vendrami, David L.J.
Telesca, Luca
Weigand, Hannah
Weiss, Martina
Fawcett, Katie
Lehman, Katrin
Clark, Melody S.
Leese, Florian
McMinn, Carrie
Moore, Heather
Hoffman, Joseph I.

January 2017

The file contains data for 180 samples of great scallop (Pecten maximus) genotyped at 13 microsatell...

VCF file of full, filtered dataset

Katherine Silliman (6112862)

December 2018

VCF file of 13,424 single nucleotide polymorphisms (SNPs) derived from genotype-by-sequencing of 117...

VanWyngaardenM_etal_SeascapeGen_FinalEnvironmentalData

Van Wyngaarden, Mallory
Snelgrove, Paul V. R.
DiBacco, Claudio
Hamilton, Lorraine C.
Rodriguez-Ezpeleta, Naiara
Zhan, Luyao
Beiko, Robert
Bradbury, Ian R.

February 2018

This file contains data for the final 90 environmental variables used to compare genetic and environ...

VCF file for 6605 SNPs used in gene-environment association analyses

Harrisson, Katherine

September 2017

The file Harrisson_etal_MurrayCod_6605_loci is a VCF formatted file that includes genotypes (6605 SN...

1137 summer flounder SNPs

Hoey, Jennifer
Pinsky, Malin

June 2018

VCF file containing ddRADseq data for summer flounder. This file contains the first SNP on each cont...

RAD sequencing sheds new light on the genetic structure and local adaptation of European scallops and resolves their demographic histories

Vendrami, David L. J.
de Noia, Michele
Telesca, Luca
Handal, William
Charrier, Grégory
Boudry, Pierre
Eberhart-Phillips, Luke
Hoffman, Joseph I.

May 2019

WOS:000468025300051International audienceRecent developments in genomics are advancing our understan...

VanWyngaardenM_etal_SeascapeGen_RADseq_SNPs

Van Wyngaarden, Mallory
Snelgrove, Paul V. R.
DiBacco, Claudio
Hamilton, Lorraine C.
Rodriguez-Ezpeleta, Naiara
Zhan, Luyao
Beiko, Robert
Bradbury, Ian R.

February 2018

This VCF file contains 7216 RAD-seq derived SNPs detected among 12 Northwest Atlantic Ocean populati...

VanWyngaardenM_etal_RADseq_SNPs

Van Wyngaarden, Mallory
Snelgrove, Paul V.R.
DiBacco, Claudio
Hamilton, Lorraine C.
Rodríguez-Ezpeleta, Naiara
Jeffery, Nicholas W.
Stanley, Ryan R.E.
Bradbury, Ian R.

August 2016

This VCF file contains 7216 RAD-seq derived SNPs detected among 12 Northwest Atlantic Ocean populati...

VanWyngaardenM_etal_GeogDistMatrix

Van Wyngaarden, Mallory
Snelgrove, Paul V.R.
DiBacco, Claudio
Hamilton, Lorraine C.
Rodríguez-Ezpeleta, Naiara
Jeffery, Nicholas W.
Stanley, Ryan R.E.
Bradbury, Ian R.

August 2016

This file contains matrices of pairwise geographic distances (km; shortest distance and estimated oc...

VCF file of putative outlier SNPs

Katherine Silliman (6112862)

December 2018

VCF file of 235 putative adaptive SNPs derived from genotype-by-sequencing data of 117 Olympia oyste...

VCF files of ddRAD seq data of Bermuda petrel population

Rita O. Afonso
Francisco Pina Martins
Mónica C. Silva

January 2024

Two VCF files resulted from two different filtering and analyses of ddRAD sequencing data of the end...

VanWyngaardenM_etal_SeascapeGen_RADseq_Barcodes_Index

Mallory Van Wyngaarden (3199611)
Paul V. R. Snelgrove (242762)
Claudio DiBacco (3199614)
Lorraine C. Hamilton (714596)
Naiara Rodriguez-Ezpeleta (68554)
Luyao Zhan (5032535)
Robert Beiko (3245190)
Ian R. Bradbury (532219)

March 2018

This file contains population information and the sequences for the P1 Barcodes and the P2 Indexes ...

VCF file of putative neutral SNPs

Silliman, Katherine

December 2018

VCF file of 13,073 putative neutral SNPs derived from genotype-by-sequencing data of 117 Olympia oys...

Data from: Oceanographic variation influences spatial genomic structure in the sea scallop, Placopecten magellanicus

Van Wyngaarden, Mallory
Snelgrove, Paul V. R.
DiBacco, Claudio
Hamilton, Lorraine C.
Rodriguez-Ezpeleta, Naiara
Zhan, Luyao
Beiko, Robert
Bradbury, Ian R.

Environmental factors can influence diversity and population structure in marine species and accurat...

Data files associated with the manuscript, "Adaptive Genetic Variation Underlies Biocomplexity of Atlantic Cod in the Gulf of Maine and on Georges Bank."

Gemma Clucas (4235221)

February 2019

Included are VCFs for the SNP datasets used for analysis and a supplementary file detailing Fst outl...

Pmaximus_Microsatellite_genotypes

Vendrami, David L.J.
Telesca, Luca
Weigand, Hannah
Weiss, Martina
Fawcett, Katie
Lehman, Katrin
Clark, Melody S.
Leese, Florian
McMinn, Carrie
Moore, Heather
Hoffman, Joseph I.

January 2017

The file contains data for 180 samples of great scallop (Pecten maximus) genotyped at 13 microsatell...

VCF file of full, filtered dataset

Katherine Silliman (6112862)

December 2018

VCF file of 13,424 single nucleotide polymorphisms (SNPs) derived from genotype-by-sequencing of 117...

VanWyngaardenM_etal_SeascapeGen_FinalEnvironmentalData

Van Wyngaarden, Mallory
Snelgrove, Paul V. R.
DiBacco, Claudio
Hamilton, Lorraine C.
Rodriguez-Ezpeleta, Naiara
Zhan, Luyao
Beiko, Robert
Bradbury, Ian R.

February 2018

This file contains data for the final 90 environmental variables used to compare genetic and environ...

VCF file for 6605 SNPs used in gene-environment association analyses

Harrisson, Katherine

September 2017

The file Harrisson_etal_MurrayCod_6605_loci is a VCF formatted file that includes genotypes (6605 SN...

1137 summer flounder SNPs

Hoey, Jennifer
Pinsky, Malin

June 2018

VCF file containing ddRADseq data for summer flounder. This file contains the first SNP on each cont...

RAD sequencing sheds new light on the genetic structure and local adaptation of European scallops and resolves their demographic histories

Vendrami, David L. J.
de Noia, Michele
Telesca, Luca
Handal, William
Charrier, Grégory
Boudry, Pierre
Eberhart-Phillips, Luke
Hoffman, Joseph I.

May 2019

WOS:000468025300051International audienceRecent developments in genomics are advancing our understan...

VanWyngaardenM_etal_SeascapeGen_RADseq_SNPs

Abstract

Extracted data

VanWyngaardenM_etal_SeascapeGen_RADseq_SNPs

Abstract

Extracted data

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