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genome_getprobe_BLAST

Marianne Espeland (381662)
Jesse W. Breinholt (121808)
Keith R. Willmott (547160)
Andrew D. Warren (787370)
Roger Vila (693487)
Emmanuel F.A. Toussaint (3339168)
Sarah C. Maunsell (3286062)
Kwaku Aduse-Poku (3222144)
Gerard Talavera (3137586)
Rodney Eastwood (5025578)
Marta A. Jarzyna (5016617)
Robert Guralnick (335882)
David J. Lohman (614431)
Naomi E. Pierce (111973)
Akito Y. Kawahara (263501)

Publication date

March 2018

DOI

10.5061/dryad.v1h63/9

Abstract

Python script used to pull possible hits to probe loci from transcriptomes and genomes

Extracted data

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The script "BLAST_to_Coding_SSR.R” (https://github.com/soltislab/transcriptome_microsats/blob/maste...

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Gaffé, Joël
Deatherage, Daniel E.
Tenaillon, Olivier
Briska, Adam M.
Ptashkin, Ryan N.
Cruveiller, Stéphane
Médigue, Claudine
Lenski, Richard E.
Barrick, Jeffrey E.
Schneider, Dominique

October 2014

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Elgvin, Tore
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Shichao Chen (390934)
Douglas E. Soltis (280742)
Pamela S. Soltis (105006)

October 2016

The script "BLAST_to_Coding_SSR.R” (https://github.com/soltislab/transcriptome_microsats/blob/maste...

Allelic_Richness_Script

Theodoridis, Spyros
Randin, Christophe
Szövényi, Peter
Boucher, Florian
Patsiou, Theofania
Conti, Elena

December 2016

The python programm that was used for calculating the allelic richness and private allelic richness ...

contamination_filter

Breinholt, Jesse W.
Earl, Chandra

May 2017

python script to process blast results of blasting sequences from each loci against themselves using...

GenBank Pipeline Subscripts

Provost, Kaiya L.
Joseph, Leo
Smith, Brian Tilston

November 2017

This zip file contains multiple Python scripts called by the scripts in the GenBank Main Scripts fil...

Che, Li-Heng
Zhang, Shao-Qian
Li, Yun
Liang, Dan
Pang, Hong
Ślipiński, Adam
Zhang, Peng

March 2017

Automation Python scripts used in the analysis, including some genome mining procedures (Filter_long...

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Henaff, Elizabeth
Henssen, Anton
Mason, Christopher E.
Kentsis, Alex

July 2015

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