Additional file 1: of Mycobacterium tuberculosis thymidylate kinase antigen assays for designating incipient, high-risk latent M.tb infection

Misaki Wayengera (95589)
David Kateete (3408029)
Benon Asiimwe (3439439)
Moses Joloba (230166)

Publication date

March 2018

DOI

10.6084/m9.figshare.5995696.v1

Abstract

This file shows processing of the duplicate EIA readings for TMKmt Ag capture among the 46 HIV+ve LTBI and 36 HIV-ve LTBI relative to the 9 NTB controls and 2 rTMKmt positive controls. Overall, readings of blanks were subtracted from the average ODs of the test wells to obtain a corrected average ODs used to draw the graphs. (XLSX 29 kb

Extracted data

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Additional file 1: of Mycobacterium tuberculosis thymidylate kinase antigen assays for designating incipient, high-risk latent M.tb infection

Misaki Wayengera (95589)
David Kateete (3408029)
Benon Asiimwe (3439439)
Moses Joloba (230166)

Open link

Publication date

March 2018

DOI

10.6084/m9.figshare.5995696.v1

Abstract

Extracted data

Ming-Jin Zhang (5258756)
Wen-Zhi Ren (4336492)
Xue-Juan Sun (5258753)
Yang Liu (4212112)
Ke-Wei Liu (105591)
Zhong-Hao Ji (4336486)
Wei Gao (2085)
Bao Yuan (585607)

May 2018

Raw data of 2143 simples. Clinical specimens test results from the infectious diseases hospital of C...

Additional file 5: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S5. Biomarker loadings for factors in incident active TB analysis (Nâ=â220). (DOCX 15 kb

Additional file 1: of Interferon-γ release assay as a sensitive diagnostic tool of latent tuberculosis infection in patients with HIV: a cross-sectional study

Giselle Klautau (5055842)
Nadijane da Mota (5991023)
Mauro Salles (5055839)
Marcelo Burattini (5991026)
Denise Rodrigues (5991029)

November 2018

Figure S1. ROC curve for IGRA according to the risk of infection with TB in HIV-infected patients at...

Additional file 1: of Modified genome comparison method: a new approach for identification of specific targets in molecular diagnostic tests using Mycobacterium tuberculosis complex as an example

Alireza Neshani (5852528)
Reza Kamali Kakhki (5852531)
Mojtaba Sankian (5852534)
Hosna Zare (5852537)
Amin Hooshyar Chichaklu (5852546)
Mahsa Sayyadi (5852549)
Kiarash Ghazvini (5852555)

October 2018

Table S1. Investigating the presence of rpoB and 5KST diagnostic targets in M. tuberculosis complete...

Additional file 1: of Immune activation and regulatory T cells in Mycobacterium tuberculosis infected lymph nodes

Karima Sahmoudi (5947883)
Hassan Abbassi (5947886)
Nada Bouklata (784607)
Mohamed El Alami (5947889)
Abderrahmane Sadak (5947892)
Christopher Burant (5947895)
W. Henry Boom (125099)
Rajae El Aouad (127755)
David Canaday (5947898)
Fouad Seghrouchni (784610)

November 2018

CD8+ T-cell subset distribution in PBMC and LNMC. Relatives frequencies of CD8+ T cells among all CD...

Additional file 1: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S1. Biomarker loadings for each factor in primary CTF analysis (Nâ=â290). (DOCX 18 kb

Additional file 1: of Differentiation of Mycobacterium tuberculosis complex from non-tubercular mycobacteria by nested multiplex PCR targeting IS6110, MTP40 and 32kD alpha antigen encoding gene fragments

Pallavi Sinha (718303)
Anamika Gupta (3418130)
Pradyot Prakash (3418127)
Shampa Anupurba (3148419)
Rajneesh Tripathi (3148431)
G. Srivastava (3418124)

March 2016

Comparison of conventional procedures with single-step & nested multiplex PCR for detection of M. tu...

Additional file 3: of Diagnostic accuracy of the rapid urine lipoarabinomannan test for pulmonary tuberculosis among HIV-infected adults in Ghanaâfindings from the DETECT HIV-TB study

Stephanie Bjerrum (3509630)
Ernest Kenu (664172)
Margaret Lartey (664176)
Mercy Newman (409617)
Kennedy Addo (3515036)
Aase Andersen (3515039)
Isik Johansen (3443192)

October 2015

Inter-rater variability for reader 1 and 2. (a.) Shown for presence versus absence of a test band wi...

Additional file 6: of Diagnostic accuracy of the rapid urine lipoarabinomannan test for pulmonary tuberculosis among HIV-infected adults in Ghanaâfindings from the DETECT HIV-TB study

Stephanie Bjerrum (3509630)
Ernest Kenu (664172)
Margaret Lartey (664176)
Mercy Newman (409617)
Kennedy Addo (3515036)
Aase Andersen (3515039)
Isik Johansen (3443192)

October 2015

Inter-variability for spot and morning samples. (a.) Shown for presence versus absence of a test ban...

Additional file 3: Table S2. of Serological diagnosis of pulmonary Mycobacterium tuberculosis infection by LIPS using a multiple antigen mixture

Peter Burbelo (3567938)
Jason Keller (30740)
Jason Wagner (2941464)
James Klimavicz (3567941)
Ahmad Bayat (135493)
Craig Rhodes (3567947)
Bassirou Diarra (322828)
Ploenchan Chetchotisakd (265407)
Yupin Suputtamongkol (35778)
Sasisopin Kiertiburanakul (427725)
Steven Holland (3456395)
Sarah Browne (3567944)
Sophia Siddiqui (322827)
Joseph Kovacs (3440435)

October 2015

Raw LIPS data (LU) from separate tests for 8 MTB antigens with cohort 2. (XLS 18Â kb

Additional file 2: of Immune activation and regulatory T cells in Mycobacterium tuberculosis infected lymph nodes

Karima Sahmoudi (5947883)
Hassan Abbassi (5947886)
Nada Bouklata (784607)
Mohamed El Alami (5947889)
Abderrahmane Sadak (5947892)
Christopher Burant (5947895)
W. Henry Boom (125099)
Rajae El Aouad (127755)
David Canaday (5947898)
Fouad Seghrouchni (784610)

November 2018

Cytokine expression of memory CD4+T cells after ESAT6/CFP10 stimulation. Results from 11 subjects ar...

Additional file 2: of Diagnostic accuracy of the rapid urine lipoarabinomannan test for pulmonary tuberculosis among HIV-infected adults in Ghana–findings from the DETECT HIV-TB study

Stephanie Bjerrum (3509630)
Ernest Kenu (664172)
Margaret Lartey (664176)
Mercy Newman (409617)
Kennedy Addo (3515036)
Aase Andersen (3515039)
Isik Johansen (3443192)

October 2015

The original 2012 LAM test reference scale card used in the study and interpretation. The integers u...

Additional file 1: Figure S1. of Mycobacterium tuberculosis secretory proteins downregulate T cell activation by interfering with proximal and downstream T cell signalling events

Bhawna Sharma (3573842)
Rajni Upadhyay (3573839)
Bhavyata Dua (3573833)
Naim Khan (3573848)
Vishwa Katoch (3573836)
Bharat Bajaj (3573845)
Beenu Joshi (310271)

November 2015

(A-C) Lymphocyte transformation test for dose optimisation of Ag85A, ESAT-6 and H37Rv by using PBMCs...

Additional file 1: of GeneChip analysis of resistant Mycobacterium tuberculosis with previously treated tuberculosis in Changchun

Ming-Jin Zhang (5258756)
Wen-Zhi Ren (4336492)
Xue-Juan Sun (5258753)
Yang Liu (4212112)
Ke-Wei Liu (105591)
Zhong-Hao Ji (4336486)
Wei Gao (2085)
Bao Yuan (585607)

May 2018

Raw data of 2143 simples. Clinical specimens test results from the infectious diseases hospital of C...

Additional file 5: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S5. Biomarker loadings for factors in incident active TB analysis (Nâ=â220). (DOCX 15 kb

Additional file 1: of Interferon-γ release assay as a sensitive diagnostic tool of latent tuberculosis infection in patients with HIV: a cross-sectional study

Giselle Klautau (5055842)
Nadijane da Mota (5991023)
Mauro Salles (5055839)
Marcelo Burattini (5991026)
Denise Rodrigues (5991029)

November 2018

Figure S1. ROC curve for IGRA according to the risk of infection with TB in HIV-infected patients at...

Additional file 1: of Modified genome comparison method: a new approach for identification of specific targets in molecular diagnostic tests using Mycobacterium tuberculosis complex as an example

Alireza Neshani (5852528)
Reza Kamali Kakhki (5852531)
Mojtaba Sankian (5852534)
Hosna Zare (5852537)
Amin Hooshyar Chichaklu (5852546)
Mahsa Sayyadi (5852549)
Kiarash Ghazvini (5852555)

October 2018

Table S1. Investigating the presence of rpoB and 5KST diagnostic targets in M. tuberculosis complete...

Additional file 1: of Immune activation and regulatory T cells in Mycobacterium tuberculosis infected lymph nodes

Karima Sahmoudi (5947883)
Hassan Abbassi (5947886)
Nada Bouklata (784607)
Mohamed El Alami (5947889)
Abderrahmane Sadak (5947892)
Christopher Burant (5947895)
W. Henry Boom (125099)
Rajae El Aouad (127755)
David Canaday (5947898)
Fouad Seghrouchni (784610)

November 2018

CD8+ T-cell subset distribution in PBMC and LNMC. Relatives frequencies of CD8+ T cells among all CD...

Additional file 1: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S1. Biomarker loadings for each factor in primary CTF analysis (Nâ=â290). (DOCX 18 kb

Pallavi Sinha (718303)
Anamika Gupta (3418130)
Pradyot Prakash (3418127)
Shampa Anupurba (3148419)
Rajneesh Tripathi (3148431)
G. Srivastava (3418124)

March 2016

Comparison of conventional procedures with single-step & nested multiplex PCR for detection of M. tu...

Additional file 3: of Diagnostic accuracy of the rapid urine lipoarabinomannan test for pulmonary tuberculosis among HIV-infected adults in Ghanaâfindings from the DETECT HIV-TB study

Stephanie Bjerrum (3509630)
Ernest Kenu (664172)
Margaret Lartey (664176)
Mercy Newman (409617)
Kennedy Addo (3515036)
Aase Andersen (3515039)
Isik Johansen (3443192)

October 2015

Inter-rater variability for reader 1 and 2. (a.) Shown for presence versus absence of a test band wi...

Additional file 6: of Diagnostic accuracy of the rapid urine lipoarabinomannan test for pulmonary tuberculosis among HIV-infected adults in Ghanaâfindings from the DETECT HIV-TB study

Stephanie Bjerrum (3509630)
Ernest Kenu (664172)
Margaret Lartey (664176)
Mercy Newman (409617)
Kennedy Addo (3515036)
Aase Andersen (3515039)
Isik Johansen (3443192)

October 2015

Inter-variability for spot and morning samples. (a.) Shown for presence versus absence of a test ban...

Additional file 3: Table S2. of Serological diagnosis of pulmonary Mycobacterium tuberculosis infection by LIPS using a multiple antigen mixture

Peter Burbelo (3567938)
Jason Keller (30740)
Jason Wagner (2941464)
James Klimavicz (3567941)
Ahmad Bayat (135493)
Craig Rhodes (3567947)
Bassirou Diarra (322828)
Ploenchan Chetchotisakd (265407)
Yupin Suputtamongkol (35778)
Sasisopin Kiertiburanakul (427725)
Steven Holland (3456395)
Sarah Browne (3567944)
Sophia Siddiqui (322827)
Joseph Kovacs (3440435)

October 2015

Raw LIPS data (LU) from separate tests for 8 MTB antigens with cohort 2. (XLS 18Â kb

Additional file 2: of Immune activation and regulatory T cells in Mycobacterium tuberculosis infected lymph nodes

Karima Sahmoudi (5947883)
Hassan Abbassi (5947886)
Nada Bouklata (784607)
Mohamed El Alami (5947889)
Abderrahmane Sadak (5947892)
Christopher Burant (5947895)
W. Henry Boom (125099)
Rajae El Aouad (127755)
David Canaday (5947898)
Fouad Seghrouchni (784610)

November 2018

Cytokine expression of memory CD4+T cells after ESAT6/CFP10 stimulation. Results from 11 subjects ar...

Additional file 2: of Diagnostic accuracy of the rapid urine lipoarabinomannan test for pulmonary tuberculosis among HIV-infected adults in Ghana–findings from the DETECT HIV-TB study

Stephanie Bjerrum (3509630)
Ernest Kenu (664172)
Margaret Lartey (664176)
Mercy Newman (409617)
Kennedy Addo (3515036)
Aase Andersen (3515039)
Isik Johansen (3443192)

October 2015

The original 2012 LAM test reference scale card used in the study and interpretation. The integers u...

Additional file 1: Figure S1. of Mycobacterium tuberculosis secretory proteins downregulate T cell activation by interfering with proximal and downstream T cell signalling events

Bhawna Sharma (3573842)
Rajni Upadhyay (3573839)
Bhavyata Dua (3573833)
Naim Khan (3573848)
Vishwa Katoch (3573836)
Bharat Bajaj (3573845)
Beenu Joshi (310271)

November 2015

(A-C) Lymphocyte transformation test for dose optimisation of Ag85A, ESAT-6 and H37Rv by using PBMCs...

Additional file 1: of GeneChip analysis of resistant Mycobacterium tuberculosis with previously treated tuberculosis in Changchun

Ming-Jin Zhang (5258756)
Wen-Zhi Ren (4336492)
Xue-Juan Sun (5258753)
Yang Liu (4212112)
Ke-Wei Liu (105591)
Zhong-Hao Ji (4336486)
Wei Gao (2085)
Bao Yuan (585607)

May 2018

Raw data of 2143 simples. Clinical specimens test results from the infectious diseases hospital of C...

Additional file 5: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S5. Biomarker loadings for factors in incident active TB analysis (Nâ=â220). (DOCX 15 kb

Additional file 1: of Mycobacterium tuberculosis thymidylate kinase antigen assays for designating incipient, high-risk latent M.tb infection

Abstract

Extracted data

Additional file 1: of Mycobacterium tuberculosis thymidylate kinase antigen assays for designating incipient, high-risk latent M.tb infection

Abstract

Extracted data

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