Additional file 17: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

Additional file 15: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James O’Callaghan (560746)
Patrick McGowan (3777289)

March 2018

Table S10. Gene Ontology (GO) Biological Process (BP) annotations found to be enriched in genes iden...

Additional file 8: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Figure S4. Hippocampus RNA-seq significantly enriched KEGG pathway annotations. KEGG pathways signif...

Additional file 6: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S3. Gene Ontology (GO) Biological Process (BP) annotations enriched in the genes identified as...

Additional file 16: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S11. Genes identified as containing differentially methylated regions in the frontal cortex of...

Additional file 12: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Figure S5. Overlap of genes significantly differentially expressed with CORT + DFP exposure in the f...

Additional file 18: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S13. Genes identified by PePr as having differential enrichment of H3K27ac in the frontal cort...

Additional file 19: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S14. Genes identified by diffReps as having differential enrichment of H3K27ac in the frontal ...

Additional file 26: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S18. Genes which are significantly differentially expressed uniquely in CORT + DFP and have a ...

Additional file 3: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S1. Genes identified as uniquely differentially expressed in the frontal cortex after CORT + D...

Additional file 20: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S15. Genes identified by both PePr and diffReps as having differential enrichment of H3K27ac i...

Additional file 14: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James O’Callaghan (560746)
Patrick McGowan (3777289)

March 2018

Table S9. KEGG pathways found to be enriched in genes identified as uniquely differentially expresse...

Additional file 9: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S5. KEGG pathways enriched in the genes identified as uniquely differentially expressed in the...

Additional file 10: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S6. Gene Ontology (GO) Biological Process (BP) annotations enriched in the genes identified as...

Additional file 5: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S2. KEGG pathways enriched in the genes identified as uniquely differentially expressed in the...

Additional file 23: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James O’Callaghan (560746)
Patrick McGowan (3777289)

March 2018

Table S17. KEGG pathways found to be enriched in genes identified as uniquely differentially enrichm...

Additional file 15: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James O’Callaghan (560746)
Patrick McGowan (3777289)

March 2018

Table S10. Gene Ontology (GO) Biological Process (BP) annotations found to be enriched in genes iden...

Additional file 8: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Figure S4. Hippocampus RNA-seq significantly enriched KEGG pathway annotations. KEGG pathways signif...

Additional file 6: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S3. Gene Ontology (GO) Biological Process (BP) annotations enriched in the genes identified as...

Additional file 16: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S11. Genes identified as containing differentially methylated regions in the frontal cortex of...

Additional file 12: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Figure S5. Overlap of genes significantly differentially expressed with CORT + DFP exposure in the f...

Additional file 18: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S13. Genes identified by PePr as having differential enrichment of H3K27ac in the frontal cort...

Additional file 19: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S14. Genes identified by diffReps as having differential enrichment of H3K27ac in the frontal ...

Additional file 26: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S18. Genes which are significantly differentially expressed uniquely in CORT + DFP and have a ...

Additional file 3: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S1. Genes identified as uniquely differentially expressed in the frontal cortex after CORT + D...

Additional file 20: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S15. Genes identified by both PePr and diffReps as having differential enrichment of H3K27ac i...

Additional file 14: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James O’Callaghan (560746)
Patrick McGowan (3777289)

March 2018

Table S9. KEGG pathways found to be enriched in genes identified as uniquely differentially expresse...

Additional file 9: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S5. KEGG pathways enriched in the genes identified as uniquely differentially expressed in the...

Additional file 10: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S6. Gene Ontology (GO) Biological Process (BP) annotations enriched in the genes identified as...

Additional file 5: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S2. KEGG pathways enriched in the genes identified as uniquely differentially expressed in the...

Additional file 23: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James O’Callaghan (560746)
Patrick McGowan (3777289)

March 2018

Table S17. KEGG pathways found to be enriched in genes identified as uniquely differentially enrichm...

Additional file 15: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James O’Callaghan (560746)
Patrick McGowan (3777289)

March 2018

Table S10. Gene Ontology (GO) Biological Process (BP) annotations found to be enriched in genes iden...

Additional file 8: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Figure S4. Hippocampus RNA-seq significantly enriched KEGG pathway annotations. KEGG pathways signif...

Additional file 6: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

David Ashbrook (4974137)
Benjamin Hing (740482)
Lindsay Michalovicz (4710537)
Kimberly Kelly (217896)
Julie Miller (2948109)
Wilfred de Vega (3777286)
Diane Miller (3547892)
Gordon Broderick (92362)
James OâCallaghan (3547895)
Patrick McGowan (3777289)

March 2018

Table S3. Gene Ontology (GO) Biological Process (BP) annotations enriched in the genes identified as...

Additional file 17: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

Abstract

Extracted data

Additional file 17: of Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness

Abstract

Extracted data

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