Additional file 1: of Does heterogeneity matter in the estimation of tumour budding and tumour stroma ratio in colon cancer?

Additional file 2: of Increased expression of cancer-associated fibroblast markers at the invasive front and its association with tumor-stroma ratio in colorectal cancer

Tessa Sandberg (6525812)
Maaike Stuart (6525815)
Jan Oosting (24912)
Rob Tollenaar (3502715)
Cornelis Sier (3853120)
Wilma Mesker (6525818)

March 2019

Raw data and normalized data of the immunofluorescent quantification. (XLSX 70 kb

Additional file 2: Figure S2. of Tumor slice culture system to assess drug response of primary breast cancer

Kishan Naipal (3537470)
Nicole Verkaik (3537464)
Humberto Sánchez (3537500)
Carolien van Deurzen (3537476)
Michael den Bakker (249874)
Jan Hoeijmakers (70179)
Roland Kanaar (9063)
Maaike Vreeswijk (3537473)
Agnes Jager (659189)
Dik van Gent (3537467)

February 2016

Title: Analysis of constant movement and optimal culture medium at 48 hours incubation. Description:...

Additional file 2: of Comparative proteogenomic analysis of right-sided colon cancer, left-sided colon cancer and rectal cancer reveals distinct mutational profiles

Robin Imperial (6113699)
Zaheer Ahmed (2471398)
Omer Toor (6113702)
Cihat ErdoÄan (6113705)
Ateeq Khaliq (6113708)
Paul Case (6113711)
James Case (6113714)
Kevin Kennedy (40172)
Lee Cummings (6113717)
Niklas Melton (6113720)
Shahzad Raza (6113723)
Banu Diri (4598581)
Ramzi Mohammad (3520061)
Bassel El-Rayes (4006997)
Timothy Pluard (6113726)
Arif Hussain (226527)
Janakiraman Subramanian (5150669)
Ashiq Masood (6113729)

December 2018

Inclusion and exclusion criteria for somatic mutation analysis. MSI-H, POLE mutation samples, rectos...

Additional file 1: of Clonal relationships between lobular carcinoma in situ and other breast malignancies

Colin Begg (3538715)
Irina Ostrovnaya (427213)
Jose Carniello (3538703)
Rita Sakr (3538706)
Dilip Giri (607574)
Russell Towers (3538712)
Michail Schizas (3538709)
Marina De Brot (3362366)
Victor Andrade (3538721)
Audrey Mauguen (241088)
Venkatraman Seshan (3538724)
Tari King (3538718)

June 2016

Separate plots are provided for copy number comparisons of all pairs of lesions ascertained in the s...

Additional file 3: of Clonal relatedness in tumour pairs of breast cancer patients

Jana Biermann (5618684)
Toshima Parris (3762496)
Szilรกrd Nemes (5618741)
Anna Danielsson (172641)
Hanna Engqvist (5618690)
Elisabeth Werner Rรถnnerman (5618744)
Eva Forssell-Aronsson (658141)
Anikรณ Kovรกcs (5618747)
Per Karlsson (48671)
Khalil Helou (561963)

August 2018

Table S2. Variabilities of the studied sample groups with the variability spanning between 5th and 9...

Additional file 2: of Evaluation of the association between quantitative mammographic density and breast cancer occurred in different quadrants

Siwa Chan (3930425)
Jeon-Hor Chen (3930431)
Shunshan Li (3930419)
Rita Chang (3930437)
Darh-Cherng Yeh (3930434)
Ruey-Feng Chang (3930422)
Lee-Ren Yeh (848820)
Jessica Kwong (3930428)
Min-Ying Su (3930416)

April 2017

Estimated odds of tumor development in the four quadrants. Based on GEE modeling, there was a statis...

Additional file 2: of Clonal relatedness in tumour pairs of breast cancer patients

Jana Biermann (5618684)
Toshima Parris (3762496)
Szilรกrd Nemes (5618741)
Anna Danielsson (172641)
Hanna Engqvist (5618690)
Elisabeth Werner Rรถnnerman (5618744)
Eva Forssell-Aronsson (658141)
Anikรณ Kovรกcs (5618747)
Per Karlsson (48671)
Khalil Helou (561963)

August 2018

Table S1. Overview of clinical characteristics of the patient and tumour information stratified by t...

Additional file 2: of Gene expression profiles in genome instability-based classes of colorectal cancer

Vincenza Barresi (1476067)
Giacomo Cinnirella (6101021)
Giovanna Valenti (330762)
Giorgia Spampinato (6101024)
NicolĂ˛ Musso (6101033)
Sergio Castorina (6101030)
Daniele Condorelli (1476064)

December 2018

Figure. S1 Top 30 differentially expressed genes between CRC groups and normal tissue (this number w...

Additional file 2: of Prognostic value of total number of lymph nodes retrieved differs between left-sided colon cancer and right-sided colon cancer in stage III patients with colon cancer

Lin Yang (45852)
Zhenchong Xiong (5211881)
Qiankun Xie (621714)
Wenzhuo He (4709371)
Shousheng Liu (5211884)
Pengfei Kong (353367)
Chang Jiang (556385)
Guifang Guo (2553031)
Liangping Xia (3155088)

May 2018

Figure S2. (A) Survival curves of low- and high- total number of lymph nodes patients in the right-s...

Additional file 1: Table S1. of Putative stem cell markers in cervical squamous cell carcinoma are correlated with poor clinical outcome

Teng Hou (841771)
Weijing Zhang (298744)
Chongjie Tong (3420650)
Gallina Kazobinka (3420653)
Xin Huang (11077)
Yongwen Huang (294991)
Yanna Zhang (828943)

October 2015

Correlation of cancer stem cell markers with histopathological variables. (DOCX 15 kb

Additional file 1: of Comparison of local tumor control in patients with HCC treated with SBRT or TACE: a propensity score analysis

Dominik Bettinger (4244179)
Eleni Gkika (4244191)
Michael Schultheiss (4244188)
Nicolas Glaser (397573)
Sophie Lange (432301)
Lars Maruschke (4244176)
Nico Buettner (4349641)
Simon Kirste (700866)
Ursula Nestle (4244182)
Anca-Ligia Grosu (126295)
Robert Thimme (76852)
Thomas Brunner (828760)

August 2018

Table S1. Multivariate logistic regression model for propensity score matching. Figure S1. Standardi...

Additional file 1: Figure S1. of Computer-assisted stereology and automated image analysis for quantification of tumor infiltrating lymphocytes in colon cancer

Ann Eriksen (4399630)
Johnnie Andersen (4399639)
Martin Kristensson (4399636)
René dePont Christensen (702930)
Torben Hansen (140523)
Sanne Kjær-Frifeldt (4399633)
Flemming Sørensen (4399627)

August 2017

A. Histogram of intensity levels for all positive detected nuclei in both the central and invasive a...

Additional file 2: Figure S1. of An ecological measure of immune-cancer colocalization as a prognostic factor for breast cancer

Carlo Maley (3309672)
Konrad Koelble (3554393)
Rachael Natrajan (265328)
Athena Aktipis (3554390)
Yinyin Yuan (225403)

September 2015

Supplementary Figures and Tables. This file contains the following figures and tables: Validation of...

Additional file 4: of Intratumor heterogeneity comparison among different subtypes of non-small-cell lung cancer through multi-region tissue and matched ctDNA sequencing

Yaxiong Zhang (629676)
Lianpeng Chang (433830)
Yunpeng Yang (522293)
Wenfeng Fang (172072)
Yanfang Guan (149221)
Aiwei Wu (420942)
Shaodong Hong (629679)
Huaqiang Zhou (6193214)
Gang Chen (107840)
Xi Chen (35903)
Shen Zhao (2583850)
Qiufan Zheng (6193217)
Hui Pan (149683)
Lanjun Zhang (449343)
Hao Long (154818)
Haoxian Yang (6193220)
Xin Wang (91924)
Zhesheng Wen (6193223)
Junye Wang (384072)
Hong Yang (37298)
Xuefeng Xia (235389)
Yuanyuan Zhao (109963)
Xue Hou (285519)
Yuxiang Ma (522295)
Ting Zhou (38572)
Zhonghan Zhang (2175106)
Jianhua Zhan (3927716)
Yan Huang (46805)
Hongyun Zhao (285512)
Ningning Zhou (3218982)
Xin Yi (180644)
Li Zhang (8200)

January 2019

Figure S2. The consistency of mutation numbers, ITH and phylogenetic trees between panel sequencing ...

Additional file 1: Table S1. of Assessing the adequacy of lymph node yield for different tumor stages of colon cancer by nodal staging scores

Zhenyu Wu (582224)
Guoyou Qin (681758)
Naiqing Zhao (65115)
Huixun Jia (4277167)
Xueying Zheng (3609065)

July 2017

Probability of missing nodal disease (false negative, %) for selected values of the number of nodes ...

Additional file 2: of Increased expression of cancer-associated fibroblast markers at the invasive front and its association with tumor-stroma ratio in colorectal cancer

Tessa Sandberg (6525812)
Maaike Stuart (6525815)
Jan Oosting (24912)
Rob Tollenaar (3502715)
Cornelis Sier (3853120)
Wilma Mesker (6525818)

March 2019

Raw data and normalized data of the immunofluorescent quantification. (XLSX 70 kb

Additional file 2: Figure S2. of Tumor slice culture system to assess drug response of primary breast cancer

Kishan Naipal (3537470)
Nicole Verkaik (3537464)
Humberto Sánchez (3537500)
Carolien van Deurzen (3537476)
Michael den Bakker (249874)
Jan Hoeijmakers (70179)
Roland Kanaar (9063)
Maaike Vreeswijk (3537473)
Agnes Jager (659189)
Dik van Gent (3537467)

February 2016

Title: Analysis of constant movement and optimal culture medium at 48 hours incubation. Description:...

Additional file 2: of Comparative proteogenomic analysis of right-sided colon cancer, left-sided colon cancer and rectal cancer reveals distinct mutational profiles

Robin Imperial (6113699)
Zaheer Ahmed (2471398)
Omer Toor (6113702)
Cihat ErdoÄan (6113705)
Ateeq Khaliq (6113708)
Paul Case (6113711)
James Case (6113714)
Kevin Kennedy (40172)
Lee Cummings (6113717)
Niklas Melton (6113720)
Shahzad Raza (6113723)
Banu Diri (4598581)
Ramzi Mohammad (3520061)
Bassel El-Rayes (4006997)
Timothy Pluard (6113726)
Arif Hussain (226527)
Janakiraman Subramanian (5150669)
Ashiq Masood (6113729)

December 2018

Inclusion and exclusion criteria for somatic mutation analysis. MSI-H, POLE mutation samples, rectos...

Additional file 1: of Clonal relationships between lobular carcinoma in situ and other breast malignancies

Colin Begg (3538715)
Irina Ostrovnaya (427213)
Jose Carniello (3538703)
Rita Sakr (3538706)
Dilip Giri (607574)
Russell Towers (3538712)
Michail Schizas (3538709)
Marina De Brot (3362366)
Victor Andrade (3538721)
Audrey Mauguen (241088)
Venkatraman Seshan (3538724)
Tari King (3538718)

June 2016

Separate plots are provided for copy number comparisons of all pairs of lesions ascertained in the s...

Additional file 3: of Clonal relatedness in tumour pairs of breast cancer patients

Jana Biermann (5618684)
Toshima Parris (3762496)
Szilรกrd Nemes (5618741)
Anna Danielsson (172641)
Hanna Engqvist (5618690)
Elisabeth Werner Rรถnnerman (5618744)
Eva Forssell-Aronsson (658141)
Anikรณ Kovรกcs (5618747)
Per Karlsson (48671)
Khalil Helou (561963)

August 2018

Table S2. Variabilities of the studied sample groups with the variability spanning between 5th and 9...

Additional file 2: of Evaluation of the association between quantitative mammographic density and breast cancer occurred in different quadrants

Siwa Chan (3930425)
Jeon-Hor Chen (3930431)
Shunshan Li (3930419)
Rita Chang (3930437)
Darh-Cherng Yeh (3930434)
Ruey-Feng Chang (3930422)
Lee-Ren Yeh (848820)
Jessica Kwong (3930428)
Min-Ying Su (3930416)

April 2017

Estimated odds of tumor development in the four quadrants. Based on GEE modeling, there was a statis...

Additional file 2: of Clonal relatedness in tumour pairs of breast cancer patients

Jana Biermann (5618684)
Toshima Parris (3762496)
Szilรกrd Nemes (5618741)
Anna Danielsson (172641)
Hanna Engqvist (5618690)
Elisabeth Werner Rรถnnerman (5618744)
Eva Forssell-Aronsson (658141)
Anikรณ Kovรกcs (5618747)
Per Karlsson (48671)
Khalil Helou (561963)

August 2018

Table S1. Overview of clinical characteristics of the patient and tumour information stratified by t...

Additional file 2: of Gene expression profiles in genome instability-based classes of colorectal cancer

Vincenza Barresi (1476067)
Giacomo Cinnirella (6101021)
Giovanna Valenti (330762)
Giorgia Spampinato (6101024)
NicolĂ˛ Musso (6101033)
Sergio Castorina (6101030)
Daniele Condorelli (1476064)

December 2018

Figure. S1 Top 30 differentially expressed genes between CRC groups and normal tissue (this number w...

Additional file 2: of Prognostic value of total number of lymph nodes retrieved differs between left-sided colon cancer and right-sided colon cancer in stage III patients with colon cancer

Lin Yang (45852)
Zhenchong Xiong (5211881)
Qiankun Xie (621714)
Wenzhuo He (4709371)
Shousheng Liu (5211884)
Pengfei Kong (353367)
Chang Jiang (556385)
Guifang Guo (2553031)
Liangping Xia (3155088)

May 2018

Figure S2. (A) Survival curves of low- and high- total number of lymph nodes patients in the right-s...

Additional file 1: Table S1. of Putative stem cell markers in cervical squamous cell carcinoma are correlated with poor clinical outcome

Teng Hou (841771)
Weijing Zhang (298744)
Chongjie Tong (3420650)
Gallina Kazobinka (3420653)
Xin Huang (11077)
Yongwen Huang (294991)
Yanna Zhang (828943)

October 2015

Correlation of cancer stem cell markers with histopathological variables. (DOCX 15 kb

Additional file 1: of Comparison of local tumor control in patients with HCC treated with SBRT or TACE: a propensity score analysis

Dominik Bettinger (4244179)
Eleni Gkika (4244191)
Michael Schultheiss (4244188)
Nicolas Glaser (397573)
Sophie Lange (432301)
Lars Maruschke (4244176)
Nico Buettner (4349641)
Simon Kirste (700866)
Ursula Nestle (4244182)
Anca-Ligia Grosu (126295)
Robert Thimme (76852)
Thomas Brunner (828760)

August 2018

Table S1. Multivariate logistic regression model for propensity score matching. Figure S1. Standardi...

Additional file 1: Figure S1. of Computer-assisted stereology and automated image analysis for quantification of tumor infiltrating lymphocytes in colon cancer

Ann Eriksen (4399630)
Johnnie Andersen (4399639)
Martin Kristensson (4399636)
René dePont Christensen (702930)
Torben Hansen (140523)
Sanne Kjær-Frifeldt (4399633)
Flemming Sørensen (4399627)

August 2017

A. Histogram of intensity levels for all positive detected nuclei in both the central and invasive a...

Additional file 2: Figure S1. of An ecological measure of immune-cancer colocalization as a prognostic factor for breast cancer

Carlo Maley (3309672)
Konrad Koelble (3554393)
Rachael Natrajan (265328)
Athena Aktipis (3554390)
Yinyin Yuan (225403)

September 2015

Supplementary Figures and Tables. This file contains the following figures and tables: Validation of...

Additional file 4: of Intratumor heterogeneity comparison among different subtypes of non-small-cell lung cancer through multi-region tissue and matched ctDNA sequencing

Yaxiong Zhang (629676)
Lianpeng Chang (433830)
Yunpeng Yang (522293)
Wenfeng Fang (172072)
Yanfang Guan (149221)
Aiwei Wu (420942)
Shaodong Hong (629679)
Huaqiang Zhou (6193214)
Gang Chen (107840)
Xi Chen (35903)
Shen Zhao (2583850)
Qiufan Zheng (6193217)
Hui Pan (149683)
Lanjun Zhang (449343)
Hao Long (154818)
Haoxian Yang (6193220)
Xin Wang (91924)
Zhesheng Wen (6193223)
Junye Wang (384072)
Hong Yang (37298)
Xuefeng Xia (235389)
Yuanyuan Zhao (109963)
Xue Hou (285519)
Yuxiang Ma (522295)
Ting Zhou (38572)
Zhonghan Zhang (2175106)
Jianhua Zhan (3927716)
Yan Huang (46805)
Hongyun Zhao (285512)
Ningning Zhou (3218982)
Xin Yi (180644)
Li Zhang (8200)

January 2019

Figure S2. The consistency of mutation numbers, ITH and phylogenetic trees between panel sequencing ...

Additional file 1: Table S1. of Assessing the adequacy of lymph node yield for different tumor stages of colon cancer by nodal staging scores

Zhenyu Wu (582224)
Guoyou Qin (681758)
Naiqing Zhao (65115)
Huixun Jia (4277167)
Xueying Zheng (3609065)

July 2017

Probability of missing nodal disease (false negative, %) for selected values of the number of nodes ...

Additional file 2: of Increased expression of cancer-associated fibroblast markers at the invasive front and its association with tumor-stroma ratio in colorectal cancer

Tessa Sandberg (6525812)
Maaike Stuart (6525815)
Jan Oosting (24912)
Rob Tollenaar (3502715)
Cornelis Sier (3853120)
Wilma Mesker (6525818)

March 2019

Raw data and normalized data of the immunofluorescent quantification. (XLSX 70 kb

Additional file 2: Figure S2. of Tumor slice culture system to assess drug response of primary breast cancer

Kishan Naipal (3537470)
Nicole Verkaik (3537464)
Humberto Sánchez (3537500)
Carolien van Deurzen (3537476)
Michael den Bakker (249874)
Jan Hoeijmakers (70179)
Roland Kanaar (9063)
Maaike Vreeswijk (3537473)
Agnes Jager (659189)
Dik van Gent (3537467)

February 2016

Title: Analysis of constant movement and optimal culture medium at 48 hours incubation. Description:...

Additional file 2: of Comparative proteogenomic analysis of right-sided colon cancer, left-sided colon cancer and rectal cancer reveals distinct mutational profiles

Robin Imperial (6113699)
Zaheer Ahmed (2471398)
Omer Toor (6113702)
Cihat ErdoÄan (6113705)
Ateeq Khaliq (6113708)
Paul Case (6113711)
James Case (6113714)
Kevin Kennedy (40172)
Lee Cummings (6113717)
Niklas Melton (6113720)
Shahzad Raza (6113723)
Banu Diri (4598581)
Ramzi Mohammad (3520061)
Bassel El-Rayes (4006997)
Timothy Pluard (6113726)
Arif Hussain (226527)
Janakiraman Subramanian (5150669)
Ashiq Masood (6113729)

December 2018

Inclusion and exclusion criteria for somatic mutation analysis. MSI-H, POLE mutation samples, rectos...

Additional file 1: of Does heterogeneity matter in the estimation of tumour budding and tumour stroma ratio in colon cancer?

Abstract

Extracted data

Additional file 1: of Does heterogeneity matter in the estimation of tumour budding and tumour stroma ratio in colon cancer?

Abstract

Extracted data

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