Additional file 9: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Additional file 9 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 9: Table S6. Rank of candidate genes for breast muscle weight within co-expression n...

Additional file 2 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 2: Table S1. Number of clean reads and mapping rate of the 399 samples

Additional file 3 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 3: Figure S2. Hierarchical clustering dendrogram of the traits analyzed

Additional file 8: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Table S1. Significant SNPs for the level of expression of the 16 candidate genes. (DOCX 36 kb

Additional file 10: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Figure S9. Manhattan plot showing the association of SNPs with CAV3 expression. Black line represent...

Additional file 3: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Figure S3. Gene environment of the region of interest for WS and BMY on GGA4. The first track corres...

Additional file 6: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Figure S6. Gene environment of the region of interest for WS on GGA18. The first track corresponds t...

Additional file 11: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Table S2. Primer sequences of the 16 candidate genes and the housekeeping gene (PDE3B). (DOCX 14 kb

Additional file 7: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Figure S7. Gene environment of the pleiotropic region on GGA4. The first track corresponds to the ch...

Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Pampouille, Eva
Berri, Cécile
Boitard, Simon
Hennequet-Antier, Christelle
Beauclercq, Stéphane
Praud, Christophe
De Bretagne, T.
Jégo,
Le Bihan-Duval, Elisabeth

January 2018

White striping (WS) is an emerging muscular defect occurring on breast and thigh muscles of broiler ...

Additional file 5 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 5: Figure S3. Quantile–quantile (QQ) plot of the association analysis for breast mus...

Additional file 6 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 6: Figure S4. Quantile–quantile (QQ) plots of the association analyses for (a) IMF p...

Additional file 9: Figure S7. of Genetical genomics of growth in a chicken model

Martin Johnsson (138967)
Rie Henriksen (345631)
Andrey HĂśglund (4792593)
Jesper Fogelholm (3912652)
Per Jensen (27629)
Dominic Wright (42569)

January 2018

Logarithm of odds curves for the region of chromosome 1 containing the two significant QTL, and a po...

Additional file 1: of Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines

Clarissa Boschiero (4799571)
Gabriel Moreira (4799577)
Almas Gheyas (3413423)
Thaís Godoy (4799562)
Gustavo Gasparin (749613)
Pilar Mariani (4799568)
Marcela Paduan (4799574)
Aline Cesar (3508628)
Mônica Ledur (4799565)
Luiz Coutinho (3508640)

January 2018

A figure with the substitution types of SNPs initially identified from the 28 chickens (broiler and ...

Additional file 1: of Genome-wide association studies targeting the yield of extraembryonic fluid and production traits in Russian White chickens

Andrei Kudinov (6557384)
Natalia Dementieva (6557387)
Olga Mitrofanova (6557390)
Olga Stanishevskaya (6557393)
Elena Fedorova (465219)
Tatiana Larkina (6557402)
Arina Mishina (6557405)
Kirill Plemyashov (5012900)
Darren Griffin (5825045)
Michael Romanov (6557408)

April 2019

Table S1. Basic information for SNP markers per chromosome after quality control. (DOCX 29 kb

Additional file 9 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 9: Table S6. Rank of candidate genes for breast muscle weight within co-expression n...

Additional file 2 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 2: Table S1. Number of clean reads and mapping rate of the 399 samples

Additional file 3 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 3: Figure S2. Hierarchical clustering dendrogram of the traits analyzed

Additional file 8: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Table S1. Significant SNPs for the level of expression of the 16 candidate genes. (DOCX 36 kb

Additional file 10: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Figure S9. Manhattan plot showing the association of SNPs with CAV3 expression. Black line represent...

Additional file 3: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Figure S3. Gene environment of the region of interest for WS and BMY on GGA4. The first track corres...

Additional file 6: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Figure S6. Gene environment of the region of interest for WS on GGA18. The first track corresponds t...

Additional file 11: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Table S2. Primer sequences of the 16 candidate genes and the housekeeping gene (PDE3B). (DOCX 14 kb

Additional file 7: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Eva Pampouille (4978163)
CĂŠcile Berri (4978169)
Simon Boitard (184972)
Christelle Hennequet-Antier (79326)
StĂŠphane Beauclercq (4978166)
Estelle Godet (214967)
Christophe Praud (624431)
Yves JĂŠgo (4978172)
Elisabeth Le Bihan-Duval (214943)

March 2018

Figure S7. Gene environment of the pleiotropic region on GGA4. The first track corresponds to the ch...

Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Pampouille, Eva
Berri, Cécile
Boitard, Simon
Hennequet-Antier, Christelle
Beauclercq, Stéphane
Praud, Christophe
De Bretagne, T.
Jégo,
Le Bihan-Duval, Elisabeth

January 2018

White striping (WS) is an emerging muscular defect occurring on breast and thigh muscles of broiler ...

Additional file 5 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 5: Figure S3. Quantile–quantile (QQ) plot of the association analysis for breast mus...

Additional file 6 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 6: Figure S4. Quantile–quantile (QQ) plots of the association analyses for (a) IMF p...

Additional file 9: Figure S7. of Genetical genomics of growth in a chicken model

Martin Johnsson (138967)
Rie Henriksen (345631)
Andrey HĂśglund (4792593)
Jesper Fogelholm (3912652)
Per Jensen (27629)
Dominic Wright (42569)

January 2018

Logarithm of odds curves for the region of chromosome 1 containing the two significant QTL, and a po...

Additional file 1: of Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines

Clarissa Boschiero (4799571)
Gabriel Moreira (4799577)
Almas Gheyas (3413423)
Thaís Godoy (4799562)
Gustavo Gasparin (749613)
Pilar Mariani (4799568)
Marcela Paduan (4799574)
Aline Cesar (3508628)
Mônica Ledur (4799565)
Luiz Coutinho (3508640)

January 2018

A figure with the substitution types of SNPs initially identified from the 28 chickens (broiler and ...

Additional file 1: of Genome-wide association studies targeting the yield of extraembryonic fluid and production traits in Russian White chickens

Andrei Kudinov (6557384)
Natalia Dementieva (6557387)
Olga Mitrofanova (6557390)
Olga Stanishevskaya (6557393)
Elena Fedorova (465219)
Tatiana Larkina (6557402)
Arina Mishina (6557405)
Kirill Plemyashov (5012900)
Darren Griffin (5825045)
Michael Romanov (6557408)

April 2019

Table S1. Basic information for SNP markers per chromosome after quality control. (DOCX 29 kb

Additional file 9 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 9: Table S6. Rank of candidate genes for breast muscle weight within co-expression n...

Additional file 2 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 2: Table S1. Number of clean reads and mapping rate of the 399 samples

Additional file 3 of Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content

Huimin Kang (435951)
Di Zhao (302432)
Hai Xiang (3913597)
Jing Li (10611)
Guiping Zhao (329296)
Hua Li (46469)

August 2021

Additional file 3: Figure S2. Hierarchical clustering dendrogram of the traits analyzed

Additional file 9: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Abstract

Extracted data

Additional file 9: of Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens

Abstract

Extracted data

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