Additional file 1: of Refining a major QTL controlling spotted wilt disease resistance in cultivated peanut (Arachis hypogaea L.) and evaluating its contribution to the resistance variations in peanut germplasm

Zifan Zhao (5004350)
Yu-Chien Tseng (3481190)
Ze Peng (188789)
Yolanda Lopez (5004353)
Charles Chen (121346)
Barry Tillman (3481193)
Phat Dang (42086)
Jianping Wang (215292)

Publication date

March 2018

DOI

10.6084/m9.figshare.6024719.v1

Abstract

Genotyping data of the bi-parental population derived from Georgia Valencia and Florida-EPâ˘â113âusing SSR and InDel markers. (XLSX 25 kb

Extracted data

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Additional file 1: of Refining a major QTL controlling spotted wilt disease resistance in cultivated peanut (Arachis hypogaea L.) and evaluating its contribution to the resistance variations in peanut germplasm

Zifan Zhao (5004350)
Yu-Chien Tseng (3481190)
Ze Peng (188789)
Yolanda Lopez (5004353)
Charles Chen (121346)
Barry Tillman (3481193)
Phat Dang (42086)
Jianping Wang (215292)

Open link

Publication date

March 2018

DOI

10.6084/m9.figshare.6024719.v1

Abstract

Genotyping data of the bi-parental population derived from Georgia Valencia and Florida-EPâ˘â113âusing SSR and InDel markers. (XLSX 25 kb

Extracted data

Weigang Chen (819220)
Yongqing Jiao (2902724)
Liangqiang Cheng (3444812)
Li Huang (107408)
Boshou Liao (118400)
Mei Tang (118388)
Xiaoping Ren (118378)
Xiaojing Zhou (521545)
Yuning Chen (118380)
Huifang Jiang (118376)

January 2016

Genetic map and positions of the QTLs of the XZ population. Scale bars on the left side described th...

Refining a major QTL controlling spotted wilt disease resistance in cultivated peanut (Arachis hypogaea L.) and evaluating its contribution to the resistance variations in peanut germplasm

Zifan Zhao
Yu-Chien Tseng
Ze Peng
Yolanda Lopez
Charles Y. Chen
Barry L. Tillman
Phat Dang
Jianping Wang

March 2018

Abstract Background Spotted wilt, caused by tomato spotted wilt virus (TSWV), has been one of major ...

Table_2_A Major and Stable QTL for Bacterial Wilt Resistance on Chromosome B02 Identified Using a High-Density SNP-Based Genetic Linkage Map in Cultivated Peanut Yuanza 9102 Derived Population.XLSX

Lifang Wang (102461)
Xiaojing Zhou (521545)
Xiaoping Ren (118378)
Li Huang (107408)
Huaiyong Luo (122016)
Yuning Chen (118380)
Weigang Chen (819220)
Nian Liu (29935)
Boshou Liao (118400)
Yong Lei (337331)
Liying Yan (475923)
Jinxiong Shen (137662)
Huifang Jiang (118376)

December 2018

Bacterial wilt (BW) is one of the important diseases limiting the production of peanut (Arachis hypo...

Additional file 1: of Identification of major QTLs underlying tomato spotted wilt virus resistance in peanut cultivar Florida-EPTM â113â

Yu-Chien Tseng (3481190)
Barry Tillman (3481193)
Ze Peng (188789)
Jianping Wang (215292)

September 2016

The number of plot, replication, check at different sites and phenotyping methods in F3, F4 and F5 p...

Additional file 4: of Identification of major QTLs underlying tomato spotted wilt virus resistance in peanut cultivar Florida-EPTM â113â

Yu-Chien Tseng (3481190)
Barry Tillman (3481193)
Ze Peng (188789)
Jianping Wang (215292)

September 2016

TSWV infection results on F2:5 population and parental lines (checks) by visual rating in 2014 at NF...

Additional file 5: of Consensus map integration and QTL meta-analysis narrowed a locus for yield traits to 0.7âcM and refined a region for late leaf spot resistance traits to 0.38âcM on linkage group A05 in peanut (Arachis hypogaea L.)

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Table S3. MQTLs for yield and disease resistance identified by meta-analysis. (XLSX 17âkb

Additional file 2: of Consensus map integration and QTL meta-analysis narrowed a locus for yield traits to 0.7âcM and refined a region for late leaf spot resistance traits to 0.38âcM on linkage group A05 in peanut (Arachis hypogaea L.)

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Figure S1. Distribution of all the initial QTLs on the linkage groups of the integrated consensus ma...

Additional file 1: of Consensus map integration and QTL meta-analysis narrowed a locus for yield traits to 0.7âcM and refined a region for late leaf spot resistance traits to 0.38âcM on linkage group A05 in peanut (Arachis hypogaea L.)

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Table S1. Details of previous mapping populations used for consensus map construction and QTL meta-a...

Additional file 4: of Consensus map integration and QTL meta-analysis narrowed a locus for yield traits to 0.7âcM and refined a region for late leaf spot resistance traits to 0.38âcM on linkage group A05 in peanut (Arachis hypogaea L.)

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Figure S2. Distribution of different loci on each linkage group of the integrated consensus map. (DO...

Additional file 1: of Identification of genomic regions and diagnostic markers for resistance to aflatoxin contamination in peanut (Arachis hypogaea L.)

Bolun Yu (6456236)
Dongxin Huai (762276)
Li Huang (107408)
Yanping Kang (5450288)
Xiaoping Ren (118378)
Yuning Chen (118380)
Xiaojing Zhou (521545)
Huaiyong Luo (122016)
Nian Liu (29935)
Weigang Chen (819220)
Yong Lei (337331)
Manish Pandey (460216)
Hari Sudini (6456260)
Rajeev Varshney (3467279)
Boshou Liao (118400)
Huifang Jiang (118376)

March 2019

Analysis of variance for PSII, AFB1 and AFB2 in the RIL population across three environments. (XLSX ...

Additional file 7: of Consensus map integration and QTL meta-analysis narrowed a locus for yield traits to 0.7âcM and refined a region for late leaf spot resistance traits to 0.38âcM on linkage group A05 in peanut (Arachis hypogaea L.)

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Table S5. Summary of 38 candidate genes of cluster CMQTL7 for yield related traits. (XLSX 16âkb

Additional file 8: of Consensus map integration and QTL meta-analysis narrowed a locus for yield traits to 0.7âcM and refined a region for late leaf spot resistance traits to 0.38âcM on linkage group A05 in peanut (Arachis hypogaea L.)

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Figure S3. Enrichment analysis of gene ontology terms for the candidate genes for yield and late lea...

Additional file 9: of Consensus map integration and QTL meta-analysis narrowed a locus for yield traits to 0.7âcM and refined a region for late leaf spot resistance traits to 0.38âcM on linkage group A05 in peanut (Arachis hypogaea L.)

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Table S6. Summary of 26 candidate genes of cluster CMQTL9 for late leaf spot. (XLSX 13âkb

Table_1_A Major and Stable QTL for Bacterial Wilt Resistance on Chromosome B02 Identified Using a High-Density SNP-Based Genetic Linkage Map in Cultivated Peanut Yuanza 9102 Derived Population.XLSX

Lifang Wang (102461)
Xiaojing Zhou (521545)
Xiaoping Ren (118378)
Li Huang (107408)
Huaiyong Luo (122016)
Yuning Chen (118380)
Weigang Chen (819220)
Nian Liu (29935)
Boshou Liao (118400)
Yong Lei (337331)
Liying Yan (475923)
Jinxiong Shen (137662)
Huifang Jiang (118376)

December 2018

Bacterial wilt (BW) is one of the important diseases limiting the production of peanut (Arachis hypo...

Additional file 3: of Quantitative trait locus analysis for pod- and kernel-related traits in the cultivated peanut (Arachis hypogaea L.)

Weigang Chen (819220)
Yongqing Jiao (2902724)
Liangqiang Cheng (3444812)
Li Huang (107408)
Boshou Liao (118400)
Mei Tang (118388)
Xiaoping Ren (118378)
Xiaojing Zhou (521545)
Yuning Chen (118380)
Huifang Jiang (118376)

January 2016

Genetic map and positions of the QTLs of the FI population. Scale bars on the left side described th...

Additional file 4: of Quantitative trait locus analysis for pod- and kernel-related traits in the cultivated peanut (Arachis hypogaea L.)

Weigang Chen (819220)
Yongqing Jiao (2902724)
Liangqiang Cheng (3444812)
Li Huang (107408)
Boshou Liao (118400)
Mei Tang (118388)
Xiaoping Ren (118378)
Xiaojing Zhou (521545)
Yuning Chen (118380)
Huifang Jiang (118376)

January 2016

Genetic map and positions of the QTLs of the XZ population. Scale bars on the left side described th...

Refining a major QTL controlling spotted wilt disease resistance in cultivated peanut (Arachis hypogaea L.) and evaluating its contribution to the resistance variations in peanut germplasm

Zifan Zhao
Yu-Chien Tseng
Ze Peng
Yolanda Lopez
Charles Y. Chen
Barry L. Tillman
Phat Dang
Jianping Wang

March 2018

Abstract Background Spotted wilt, caused by tomato spotted wilt virus (TSWV), has been one of major ...

Table_2_A Major and Stable QTL for Bacterial Wilt Resistance on Chromosome B02 Identified Using a High-Density SNP-Based Genetic Linkage Map in Cultivated Peanut Yuanza 9102 Derived Population.XLSX

Lifang Wang (102461)
Xiaojing Zhou (521545)
Xiaoping Ren (118378)
Li Huang (107408)
Huaiyong Luo (122016)
Yuning Chen (118380)
Weigang Chen (819220)
Nian Liu (29935)
Boshou Liao (118400)
Yong Lei (337331)
Liying Yan (475923)
Jinxiong Shen (137662)
Huifang Jiang (118376)

December 2018

Bacterial wilt (BW) is one of the important diseases limiting the production of peanut (Arachis hypo...

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Table S3. MQTLs for yield and disease resistance identified by meta-analysis. (XLSX 17âkb

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Figure S1. Distribution of all the initial QTLs on the linkage groups of the integrated consensus ma...

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Table S1. Details of previous mapping populations used for consensus map construction and QTL meta-a...

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Figure S2. Distribution of different loci on each linkage group of the integrated consensus map. (DO...

Additional file 1: of Identification of genomic regions and diagnostic markers for resistance to aflatoxin contamination in peanut (Arachis hypogaea L.)

Bolun Yu (6456236)
Dongxin Huai (762276)
Li Huang (107408)
Yanping Kang (5450288)
Xiaoping Ren (118378)
Yuning Chen (118380)
Xiaojing Zhou (521545)
Huaiyong Luo (122016)
Nian Liu (29935)
Weigang Chen (819220)
Yong Lei (337331)
Manish Pandey (460216)
Hari Sudini (6456260)
Rajeev Varshney (3467279)
Boshou Liao (118400)
Huifang Jiang (118376)

March 2019

Analysis of variance for PSII, AFB1 and AFB2 in the RIL population across three environments. (XLSX ...

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Table S5. Summary of 38 candidate genes of cluster CMQTL7 for yield related traits. (XLSX 16âkb

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Figure S3. Enrichment analysis of gene ontology terms for the candidate genes for yield and late lea...

Qing Lu (28914)
Hao Liu (12832)
Yanbin Hong (151088)
Haifen Li (405407)
Haiyan Liu (51889)
Xingyu Li (5169794)
Shijie Wen (5169788)
Guiyuan Zhou (5169785)
Shaoxiong Li (5169791)
Xiaoping Chen (42085)
Xuanqiang Liang (42087)

December 2018

Table S6. Summary of 26 candidate genes of cluster CMQTL9 for late leaf spot. (XLSX 13âkb

Table_1_A Major and Stable QTL for Bacterial Wilt Resistance on Chromosome B02 Identified Using a High-Density SNP-Based Genetic Linkage Map in Cultivated Peanut Yuanza 9102 Derived Population.XLSX

Lifang Wang (102461)
Xiaojing Zhou (521545)
Xiaoping Ren (118378)
Li Huang (107408)
Huaiyong Luo (122016)
Yuning Chen (118380)
Weigang Chen (819220)
Nian Liu (29935)
Boshou Liao (118400)
Yong Lei (337331)
Liying Yan (475923)
Jinxiong Shen (137662)
Huifang Jiang (118376)

December 2018

Bacterial wilt (BW) is one of the important diseases limiting the production of peanut (Arachis hypo...

Additional file 3: of Quantitative trait locus analysis for pod- and kernel-related traits in the cultivated peanut (Arachis hypogaea L.)

Weigang Chen (819220)
Yongqing Jiao (2902724)
Liangqiang Cheng (3444812)
Li Huang (107408)
Boshou Liao (118400)
Mei Tang (118388)
Xiaoping Ren (118378)
Xiaojing Zhou (521545)
Yuning Chen (118380)
Huifang Jiang (118376)

January 2016

Genetic map and positions of the QTLs of the FI population. Scale bars on the left side described th...

Additional file 4: of Quantitative trait locus analysis for pod- and kernel-related traits in the cultivated peanut (Arachis hypogaea L.)

Weigang Chen (819220)
Yongqing Jiao (2902724)
Liangqiang Cheng (3444812)
Li Huang (107408)
Boshou Liao (118400)
Mei Tang (118388)
Xiaoping Ren (118378)
Xiaojing Zhou (521545)
Yuning Chen (118380)
Huifang Jiang (118376)

January 2016

Genetic map and positions of the QTLs of the XZ population. Scale bars on the left side described th...

Refining a major QTL controlling spotted wilt disease resistance in cultivated peanut (Arachis hypogaea L.) and evaluating its contribution to the resistance variations in peanut germplasm

Zifan Zhao
Yu-Chien Tseng
Ze Peng
Yolanda Lopez
Charles Y. Chen
Barry L. Tillman
Phat Dang
Jianping Wang

March 2018

Abstract Background Spotted wilt, caused by tomato spotted wilt virus (TSWV), has been one of major ...

Table_2_A Major and Stable QTL for Bacterial Wilt Resistance on Chromosome B02 Identified Using a High-Density SNP-Based Genetic Linkage Map in Cultivated Peanut Yuanza 9102 Derived Population.XLSX

Lifang Wang (102461)
Xiaojing Zhou (521545)
Xiaoping Ren (118378)
Li Huang (107408)
Huaiyong Luo (122016)
Yuning Chen (118380)
Weigang Chen (819220)
Nian Liu (29935)
Boshou Liao (118400)
Yong Lei (337331)
Liying Yan (475923)
Jinxiong Shen (137662)
Huifang Jiang (118376)

December 2018

Bacterial wilt (BW) is one of the important diseases limiting the production of peanut (Arachis hypo...

Additional file 1: of Refining a major QTL controlling spotted wilt disease resistance in cultivated peanut (Arachis hypogaea L.) and evaluating its contribution to the resistance variations in peanut germplasm

Abstract

Extracted data

Additional file 1: of Refining a major QTL controlling spotted wilt disease resistance in cultivated peanut (Arachis hypogaea L.) and evaluating its contribution to the resistance variations in peanut germplasm

Abstract

Extracted data

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