<p>A) The mRNA level of each gene is altered 10-fold and EGF + insulin response of starved cells for 24 hours is simulated. Gray bar denotes wild-type, dots denote tumor suppressors (10-fold reduction), and no label denote proto-oncogenes (10-fold increase). B-D) MAP2K2 overexpression (OE-left), wild-type (middle), and MEK-Raf high affinity (right, unphosphorylated MEK has 10-fold higher affinity for all Raf species) were simulated as above and either the level of Raf bound to MEK at t = 0 (B), % proliferating cells (C) or time-averaged ppERK levels (D) were calculated.</p
<p>Using bead-based multiplex analysis, the total and phosphorylated protein levels of 10 MAPK-relat...
<p>A) In vitro assay testing the capacity of the indicated ERK to be activated by MEK and to phospho...
<p>(A) Heat-map of cell viability changes due to HGF stimulation (log<sub>2</sub> (treated with HGF/...
<p>A) Ligand-receptor cooperativity for RTK submodel (dots-deterministic simulations; lines- hill eq...
<p>A) Gene copy number, mRNA levels, and protein levels inform initial conditions and expression sub...
<p>A) Serum-starved MCF10A cells were treated as indicated for 24 hours and then assayed for cell cy...
Most cancer cells harbor multiple drivers whose epistasis and interactions with expression context c...
<div><p>Most cancer cells harbor multiple drivers whose epistasis and interactions with expression c...
<p>(A) Relative transgene (OA1) mRNA abundance in HeLa-OA1 and HepG2-OA1 cells cultured in full medi...
<p>(A) Model scheme. In the 2i scenario Erk signalling is efficiently blocked (i.e. p = 0). (B) Bifu...
Blue circles correspond to the average of experimental measurements and error bars correspond to one...
The MEK1 oncoprotein plays a critical role in Ras/Raf/ MEK/MAPK-mediated transmission of mitogenic s...
<p>(A) Simplified Signaling Network Model. Two inputs (growth factor and HGF), signaling protein nod...
<p>The columns show the effect of treatment on a hypothetical gene of interest (hypGOI) when normali...
<div><p>(A) Representative immunoblot showing ERK-p, P38-p, and JNK-p, in uninfected cells before (0...
<p>Using bead-based multiplex analysis, the total and phosphorylated protein levels of 10 MAPK-relat...
<p>A) In vitro assay testing the capacity of the indicated ERK to be activated by MEK and to phospho...
<p>(A) Heat-map of cell viability changes due to HGF stimulation (log<sub>2</sub> (treated with HGF/...
<p>A) Ligand-receptor cooperativity for RTK submodel (dots-deterministic simulations; lines- hill eq...
<p>A) Gene copy number, mRNA levels, and protein levels inform initial conditions and expression sub...
<p>A) Serum-starved MCF10A cells were treated as indicated for 24 hours and then assayed for cell cy...
Most cancer cells harbor multiple drivers whose epistasis and interactions with expression context c...
<div><p>Most cancer cells harbor multiple drivers whose epistasis and interactions with expression c...
<p>(A) Relative transgene (OA1) mRNA abundance in HeLa-OA1 and HepG2-OA1 cells cultured in full medi...
<p>(A) Model scheme. In the 2i scenario Erk signalling is efficiently blocked (i.e. p = 0). (B) Bifu...
Blue circles correspond to the average of experimental measurements and error bars correspond to one...
The MEK1 oncoprotein plays a critical role in Ras/Raf/ MEK/MAPK-mediated transmission of mitogenic s...
<p>(A) Simplified Signaling Network Model. Two inputs (growth factor and HGF), signaling protein nod...
<p>The columns show the effect of treatment on a hypothetical gene of interest (hypGOI) when normali...
<div><p>(A) Representative immunoblot showing ERK-p, P38-p, and JNK-p, in uninfected cells before (0...
<p>Using bead-based multiplex analysis, the total and phosphorylated protein levels of 10 MAPK-relat...
<p>A) In vitro assay testing the capacity of the indicated ERK to be activated by MEK and to phospho...
<p>(A) Heat-map of cell viability changes due to HGF stimulation (log<sub>2</sub> (treated with HGF/...